Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 AC087481.3-201ENST00000602886 1894 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 POM121L8P-201ENST00000417732 1281 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 GHSR-202ENST00000427970 912 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 MTX1P1-201ENST00000440904 838 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 POM121L9P-203ENST00000441984 1285 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 AL603764.1-201ENST00000636452 321 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
BEST3Q8N1M1 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 AL360270.3-201ENST00000609118 1348 ntBASIC13.95□□□□□ -0.18
BEST3Q8N1M1 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.95□□□□□ -0.18
BEST3Q8N1M1 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 AC007969.1-201ENST00000433675 447 ntBASIC13.95□□□□□ -0.18
BEST3Q8N1M1 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 COX5BP1-201ENST00000507622 393 ntBASIC13.95□□□□□ -0.18
BEST3Q8N1M1 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 OR10B1P-201ENST00000601666 907 ntBASIC13.95□□□□□ -0.18
BEST3Q8N1M1 AL118558.3-201ENST00000607414 1079 ntBASIC13.95□□□□□ -0.18
BEST3Q8N1M1 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
BEST3Q8N1M1 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms