Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LIMK1P53667 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.75□□□□□ -0.05
LIMK1P53667 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.75□□□□□ -0.05
LIMK1P53667 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.75□□□□□ -0.05
LIMK1P53667 AL022344.2-201ENST00000568976 968 ntBASIC14.75□□□□□ -0.05
LIMK1P53667 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.75□□□□□ -0.05
LIMK1P53667 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.75□□□□□ -0.05
LIMK1P53667 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.75□□□□□ -0.05
LIMK1P53667 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.75□□□□□ -0.05
LIMK1P53667 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.75□□□□□ -0.05
LIMK1P53667 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIMK1P53667 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.75□□□□□ -0.05
LIMK1P53667 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIMK1P53667 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
LIMK1P53667 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 AL158070.2-201ENST00000623713 1621 ntBASIC14.74□□□□□ -0.05
LIMK1P53667 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 AC239868.1-201ENST00000369385 493 ntBASIC14.74□□□□□ -0.05
LIMK1P53667 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 RNF146-211ENST00000609447 607 ntTSL 4 BASIC14.74□□□□□ -0.05
LIMK1P53667 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 AP001527.2-201ENST00000614441 631 ntBASIC14.74□□□□□ -0.05
LIMK1P53667 CASP16P-204ENST00000635032 809 ntBASIC14.74□□□□□ -0.05
LIMK1P53667 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.74□□□□□ -0.05
LIMK1P53667 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.74□□□□□ -0.05
LIMK1P53667 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
LIMK1P53667 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIMK1P53667 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIMK1P53667 FAM90A2P-201ENST00000511144 1395 ntBASIC14.73□□□□□ -0.05
LIMK1P53667 FAM90A25P-201ENST00000528404 1395 ntBASIC14.73□□□□□ -0.05
LIMK1P53667 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.73□□□□□ -0.05
LIMK1P53667 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIMK1P53667 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
LIMK1P53667 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIMK1P53667 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
LIMK1P53667 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.73□□□□□ -0.05
LIMK1P53667 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
LIMK1P53667 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LIMK1P53667 AC005089.1-201ENST00000619486 2241 ntBASIC14.73□□□□□ -0.05
LIMK1P53667 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LIMK1P53667 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms