Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC19.53■□□□□ 0.72
HOXC9P31274 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXC9P31274 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC19.53■□□□□ 0.72
HOXC9P31274 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 ST13P19-201ENST00000442505 1124 ntBASIC19.53■□□□□ 0.72
HOXC9P31274 NAGK-204ENST00000443872 878 ntTSL 3 BASIC19.53■□□□□ 0.72
HOXC9P31274 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 AC130709.1-201ENST00000484779 1212 ntBASIC19.53■□□□□ 0.72
HOXC9P31274 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC19.53■□□□□ 0.72
HOXC9P31274 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.53■□□□□ 0.72
HOXC9P31274 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXC9P31274 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 RPL17P45-201ENST00000586289 509 ntBASIC19.53■□□□□ 0.72
HOXC9P31274 AL022334.2-201ENST00000610000 484 ntBASIC19.53■□□□□ 0.72
HOXC9P31274 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.53■□□□□ 0.72
HOXC9P31274 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXC9P31274 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC9P31274 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC9P31274 KRT18P9-201ENST00000604826 1300 ntBASIC19.52■□□□□ 0.72
HOXC9P31274 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 KHSRPP1-201ENST00000427983 1768 ntBASIC19.52■□□□□ 0.72
HOXC9P31274 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 CICP6-201ENST00000457191 2729 ntBASIC19.52■□□□□ 0.72
HOXC9P31274 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC19.52■□□□□ 0.72
HOXC9P31274 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 AP002803.1-201ENST00000528836 498 ntBASIC19.52■□□□□ 0.72
HOXC9P31274 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
HOXC9P31274 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC19.52■□□□□ 0.72
HOXC9P31274 DNM1P30-201ENST00000563586 452 ntBASIC19.52■□□□□ 0.72
HOXC9P31274 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 CMC2-224ENST00000630396 481 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC9P31274 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
HOXC9P31274 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC9P31274 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
HOXC9P31274 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HOXC9P31274 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXC9P31274 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HOXC9P31274 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HOXC9P31274 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXC9P31274 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC9P31274 HPGD-203ENST00000422112 805 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXC9P31274 PFN2-202ENST00000423691 911 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXC9P31274 AL592076.1-201ENST00000424448 303 ntBASIC19.51■□□□□ 0.71
HOXC9P31274 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HOXC9P31274 RN7SL8P-201ENST00000461771 266 ntBASIC19.51■□□□□ 0.71
HOXC9P31274 RHEB-207ENST00000496004 744 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms