Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC064801.2-201ENST00000625052 1303 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A3P25940 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A3P25940 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.23■□□□□ 0.51
COL5A3P25940 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A3P25940 KRT8P43-201ENST00000406052 1458 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.23■□□□□ 0.51
COL5A3P25940 GEMIN8P4-201ENST00000380526 729 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.23■□□□□ 0.51
COL5A3P25940 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.23■□□□□ 0.51
COL5A3P25940 GNG10P1-201ENST00000452289 199 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 RN7SL494P-201ENST00000461517 304 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC18.23■□□□□ 0.51
COL5A3P25940 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC18.23■□□□□ 0.51
COL5A3P25940 PEBP1P2-201ENST00000603980 558 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 AL021707.6-201ENST00000609212 491 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 AC138035.3-201ENST00000622706 2791 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A3P25940 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL5A3P25940 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.22■□□□□ 0.51
COL5A3P25940 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC18.22■□□□□ 0.51
COL5A3P25940 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC18.22■□□□□ 0.51
COL5A3P25940 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC18.22■□□□□ 0.51
COL5A3P25940 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC18.22■□□□□ 0.51
COL5A3P25940 ACTBP7-201ENST00000418351 1124 ntBASIC18.22■□□□□ 0.51
COL5A3P25940 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC18.22■□□□□ 0.51
COL5A3P25940 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC18.22■□□□□ 0.51
COL5A3P25940 ALG1L3P-201ENST00000503331 765 ntBASIC18.22■□□□□ 0.51
COL5A3P25940 MIR6746-201ENST00000620971 63 ntBASIC18.22■□□□□ 0.51
COL5A3P25940 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL5A3P25940 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL5A3P25940 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A3P25940 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
COL5A3P25940 AC011270.2-201ENST00000624293 2550 ntBASIC18.21■□□□□ 0.51
COL5A3P25940 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
COL5A3P25940 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
COL5A3P25940 AC006987.1-201ENST00000413610 527 ntBASIC18.21■□□□□ 0.51
COL5A3P25940 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A3P25940 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC18.21■□□□□ 0.51
COL5A3P25940 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC18.21■□□□□ 0.51
COL5A3P25940 SKA2-205ENST00000580541 689 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A3P25940 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A3P25940 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A3P25940 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
COL5A3P25940 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A3P25940 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A3P25940 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
COL5A3P25940 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A3P25940 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC18.21■□□□□ 0.51
COL5A3P25940 FUCA1P1-201ENST00000374476 1351 ntBASIC18.21■□□□□ 0.51
COL5A3P25940 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A3P25940 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A3P25940 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL5A3P25940 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.21■□□□□ 0.51
COL5A3P25940 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC18.21■□□□□ 0.51
COL5A3P25940 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL5A3P25940 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL5A3P25940 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL5A3P25940 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC18.2■□□□□ 0.5
COL5A3P25940 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC18.2■□□□□ 0.5
COL5A3P25940 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 CHCHD2P2-201ENST00000503744 321 ntBASIC18.2■□□□□ 0.5
COL5A3P25940 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC18.2■□□□□ 0.5
COL5A3P25940 TREHP1-201ENST00000531328 465 ntBASIC18.2■□□□□ 0.5
COL5A3P25940 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 F11R-204ENST00000537746 1245 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL5A3P25940 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC18.2■□□□□ 0.5
COL5A3P25940 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 AL109809.1-201ENST00000418979 1367 ntBASIC18.2■□□□□ 0.5
COL5A3P25940 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC18.2■□□□□ 0.5
COL5A3P25940 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
COL5A3P25940 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
COL5A3P25940 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC18.2■□□□□ 0.5
COL5A3P25940 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 AC021305.1-201ENST00000520656 1514 ntBASIC18.2■□□□□ 0.5
COL5A3P25940 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 BAX-205ENST00000391871 687 ntTSL 5 BASIC18.2■□□□□ 0.5
COL5A3P25940 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms