Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.04■□□□□ -0
COL6A3P12111 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
COL6A3P12111 RN7SL684P-201ENST00000465665 294 ntBASIC15.04■□□□□ -0
COL6A3P12111 CETN3-205ENST00000522842 664 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
COL6A3P12111 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.03■□□□□ -0
COL6A3P12111 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.03■□□□□ -0
COL6A3P12111 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 AC097474.1-201ENST00000506481 1371 ntBASIC15.03■□□□□ -0
COL6A3P12111 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC15.03■□□□□ -0
COL6A3P12111 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.03■□□□□ -0
COL6A3P12111 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 AC010491.1-201ENST00000563101 2797 ntBASIC15.03■□□□□ -0
COL6A3P12111 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC15.03■□□□□ -0
COL6A3P12111 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 RN7SL487P-201ENST00000468140 344 ntBASIC15.03■□□□□ -0
COL6A3P12111 AC138035.2-201ENST00000509192 727 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 AL136298.3-201ENST00000556746 445 ntBASIC15.03■□□□□ -0
COL6A3P12111 AL139317.2-201ENST00000556998 158 ntBASIC15.03■□□□□ -0
COL6A3P12111 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC15.03■□□□□ -0
COL6A3P12111 PRR20FP-201ENST00000603320 180 ntBASIC15.03■□□□□ -0
COL6A3P12111 AL590491.2-202ENST00000611126 418 ntTSL 5 BASIC15.03■□□□□ -0
COL6A3P12111 LINC02193-207ENST00000621799 723 ntTSL 5 BASIC15.03■□□□□ -0
COL6A3P12111 AC069287.1-202ENST00000622626 723 ntTSL 5 BASIC15.03■□□□□ -0
COL6A3P12111 AC115618.3-201ENST00000623114 425 ntBASIC15.03■□□□□ -0
COL6A3P12111 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
COL6A3P12111 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL6A3P12111 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.02■□□□□ -0
COL6A3P12111 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
COL6A3P12111 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL6A3P12111 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC15.02■□□□□ -0
COL6A3P12111 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.02■□□□□ -0
COL6A3P12111 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A3P12111 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC15.02■□□□□ -0
COL6A3P12111 HNRNPA1P73-201ENST00000446472 928 ntBASIC15.02■□□□□ -0
COL6A3P12111 RN7SL202P-201ENST00000584410 262 ntBASIC15.02■□□□□ -0
COL6A3P12111 MIR5193-201ENST00000584510 109 ntBASIC15.02■□□□□ -0
COL6A3P12111 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC15.02■□□□□ -0
COL6A3P12111 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A3P12111 ZBED1P1-201ENST00000502364 1930 ntBASIC15.02■□□□□ -0
COL6A3P12111 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A3P12111 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.02■□□□□ -0
COL6A3P12111 AC103702.1-201ENST00000548801 2630 ntBASIC15.02■□□□□ -0
COL6A3P12111 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 GH1-203ENST00000351388 685 ntTSL 2 BASIC15.02□□□□□ -0.01
COL6A3P12111 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.02□□□□□ -0.01
COL6A3P12111 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
COL6A3P12111 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC15.02□□□□□ -0.01
COL6A3P12111 AC007405.2-203ENST00000455988 547 ntTSL 4 BASIC15.02□□□□□ -0.01
COL6A3P12111 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC15.02□□□□□ -0.01
COL6A3P12111 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC15.02□□□□□ -0.01
COL6A3P12111 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC15.02□□□□□ -0.01
COL6A3P12111 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.02□□□□□ -0.01
COL6A3P12111 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.02□□□□□ -0.01
COL6A3P12111 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.02□□□□□ -0.01
COL6A3P12111 CICP13-201ENST00000422015 2789 ntBASIC15.02□□□□□ -0.01
COL6A3P12111 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
COL6A3P12111 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A3P12111 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.02□□□□□ -0.01
COL6A3P12111 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
COL6A3P12111 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A3P12111 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A3P12111 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC15.01□□□□□ -0.01
COL6A3P12111 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL6A3P12111 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms