Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.42■□□□□ 0.86
NPHP4O75161 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP4O75161 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
NPHP4O75161 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
NPHP4O75161 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
NPHP4O75161 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NPHP4O75161 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 SNORA57-201ENST00000383870 149 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 AC104961.1-201ENST00000427605 771 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 KRT8P30-201ENST00000432100 650 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 AC113347.2-201ENST00000512350 279 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC20.42■□□□□ 0.86
NPHP4O75161 KLF17P1-201ENST00000547105 1126 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC20.42■□□□□ 0.86
NPHP4O75161 AP005264.5-201ENST00000590066 467 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP4O75161 AL353622.2-201ENST00000605846 425 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP4O75161 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP4O75161 AC092135.3-201ENST00000624151 1846 ntBASIC20.42■□□□□ 0.86
NPHP4O75161 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC20.42■□□□□ 0.86
NPHP4O75161 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NPHP4O75161 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
NPHP4O75161 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NPHP4O75161 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP4O75161 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP4O75161 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP4O75161 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 AC090616.6-203ENST00000579186 1945 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 AP000354.1-201ENST00000396982 456 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 PSAT1P2-201ENST00000426107 972 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 EEF1DP5-201ENST00000431410 772 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP4O75161 AC010900.1-201ENST00000449849 1296 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 GRPEL2P1-201ENST00000453145 339 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP4O75161 RN7SL375P-201ENST00000492442 298 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP4O75161 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC20.41■□□□□ 0.86
NPHP4O75161 HNRNPA1P16-201ENST00000575692 955 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 AC080013.5-201ENST00000607044 679 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 AC020904.3-201ENST00000624199 442 ntBASIC20.41■□□□□ 0.86
NPHP4O75161 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
NPHP4O75161 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP4O75161 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
NPHP4O75161 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP4O75161 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
NPHP4O75161 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC20.4■□□□□ 0.86
NPHP4O75161 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC20.4■□□□□ 0.86
NPHP4O75161 AC067931.2-201ENST00000623655 2003 ntBASIC20.4■□□□□ 0.86
NPHP4O75161 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
NPHP4O75161 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NPHP4O75161 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP4O75161 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
NPHP4O75161 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC20.4■□□□□ 0.86
NPHP4O75161 OR52M2P-201ENST00000414298 959 ntBASIC20.4■□□□□ 0.86
NPHP4O75161 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP4O75161 SOD2-205ENST00000444946 917 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP4O75161 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC20.4■□□□□ 0.86
NPHP4O75161 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC20.4■□□□□ 0.86
NPHP4O75161 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC20.4■□□□□ 0.86
NPHP4O75161 COQ4-204ENST00000608951 781 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP4O75161 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
NPHP4O75161 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC20.4■□□□□ 0.86
NPHP4O75161 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.4■□□□□ 0.86
NPHP4O75161 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC20.4■□□□□ 0.86
NPHP4O75161 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NPHP4O75161 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms