Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.61■□□□□ 0.25
HPS3Q969F9 COX5BP8-201ENST00000416911 349 ntBASIC16.61■□□□□ 0.25
HPS3Q969F9 POM121L8P-201ENST00000417732 1281 ntBASIC16.61■□□□□ 0.25
HPS3Q969F9 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.61■□□□□ 0.25
HPS3Q969F9 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 POM121L9P-203ENST00000441984 1285 ntBASIC16.61■□□□□ 0.25
HPS3Q969F9 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.61■□□□□ 0.25
HPS3Q969F9 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 SLC25A47P1-201ENST00000531577 414 ntBASIC16.61■□□□□ 0.25
HPS3Q969F9 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.61■□□□□ 0.25
HPS3Q969F9 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
HPS3Q969F9 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.61■□□□□ 0.25
HPS3Q969F9 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 SALL4P5-201ENST00000419001 1760 ntBASIC16.61■□□□□ 0.25
HPS3Q969F9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HPS3Q969F9 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HPS3Q969F9 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.61■□□□□ 0.25
HPS3Q969F9 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HPS3Q969F9 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
HPS3Q969F9 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
HPS3Q969F9 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 AL161772.1-201ENST00000610494 4412 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 RN7SKP230-201ENST00000365642 335 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 AL512384.1-201ENST00000406683 331 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 TTTY23B-201ENST00000442790 549 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 AL590640.2-201ENST00000457038 527 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.6■□□□□ 0.25
HPS3Q969F9 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 AC027307.3-201ENST00000594262 1100 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 AC105233.6-201ENST00000642093 218 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HPS3Q969F9 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
HPS3Q969F9 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 AC011840.2-201ENST00000563063 1520 ntBASIC16.6■□□□□ 0.25
HPS3Q969F9 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.6■□□□□ 0.25
HPS3Q969F9 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HPS3Q969F9 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.59■□□□□ 0.25
HPS3Q969F9 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HPS3Q969F9 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.59■□□□□ 0.25
HPS3Q969F9 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.59■□□□□ 0.25
HPS3Q969F9 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HPS3Q969F9 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.59■□□□□ 0.25
HPS3Q969F9 AC007389.4-201ENST00000454674 793 ntBASIC16.59■□□□□ 0.25
HPS3Q969F9 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.59■□□□□ 0.25
HPS3Q969F9 AL391280.1-201ENST00000506969 1062 ntBASIC16.59■□□□□ 0.25
HPS3Q969F9 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.59■□□□□ 0.25
HPS3Q969F9 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.59■□□□□ 0.25
HPS3Q969F9 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.59■□□□□ 0.25
HPS3Q969F9 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.59■□□□□ 0.25
HPS3Q969F9 AC244669.2-201ENST00000612320 853 ntBASIC16.59■□□□□ 0.25
HPS3Q969F9 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.59■□□□□ 0.25
HPS3Q969F9 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.59■□□□□ 0.25
HPS3Q969F9 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.59■□□□□ 0.25
HPS3Q969F9 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HPS3Q969F9 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms