Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 PGF-202ENST00000405431 666 ntTSL 5 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 GAPDHP21-201ENST00000450301 1010 ntBASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 SALL4P5-201ENST00000419001 1760 ntBASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 MX1-218ENST00000619682 1980 ntTSL 5 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMC4Q9NTJ3 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 MXI1-205ENST00000393134 889 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 AC007969.1-201ENST00000433675 447 ntBASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 C2orf27AP3-201ENST00000434123 579 ntBASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 AL354718.3-201ENST00000616414 581 ntBASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 CR382287.1-201ENST00000623954 586 ntBASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMC4Q9NTJ3 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 FES-203ENST00000394302 2133 ntTSL 5 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 FAM197Y7-201ENST00000432892 766 ntBASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 CROCCP4-201ENST00000457096 498 ntBASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 AC138466.3-201ENST00000619983 221 ntBASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 AC011840.2-201ENST00000563063 1520 ntBASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms