Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AC007952.4-201ENST00000573866 637 ntBASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 RN7SL357P-201ENST00000581065 298 ntBASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 CYP4F36P-201ENST00000589193 186 ntBASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AC011462.4-201ENST00000616866 449 ntBASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 TMBIM7P-202ENST00000641474 1516 ntBASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 REXO1L5P-201ENST00000622260 2098 ntBASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 CYP4F23P-201ENST00000593402 1579 ntBASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 WASH7P-201ENST00000488147 1351 ntBASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 KRT17P5-201ENST00000332088 839 ntBASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 XBP1P1-201ENST00000436573 652 ntBASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 RN7SL23P-201ENST00000484055 275 ntBASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 PPIA-208ENST00000489459 907 ntTSL 2 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 PPIA-210ENST00000620047 827 ntTSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMC1BQ8NDV3 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SMC1BQ8NDV3 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 RN7SL582P-201ENST00000491078 279 ntBASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 AC226150.1-201ENST00000544259 466 ntBASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms