Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
BDNFP23560 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
BDNFP23560 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.81■□□□□ 0.12
BDNFP23560 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
BDNFP23560 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.81■□□□□ 0.12
BDNFP23560 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 AC104306.2-201ENST00000451877 341 ntBASIC15.81■□□□□ 0.12
BDNFP23560 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.81■□□□□ 0.12
BDNFP23560 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.81■□□□□ 0.12
BDNFP23560 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 AC104982.3-201ENST00000581995 514 ntBASIC15.81■□□□□ 0.12
BDNFP23560 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.81■□□□□ 0.12
BDNFP23560 AL118558.3-201ENST00000607414 1079 ntBASIC15.81■□□□□ 0.12
BDNFP23560 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.81■□□□□ 0.12
BDNFP23560 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
BDNFP23560 AC002472.3-201ENST00000640124 621 ntBASIC15.81■□□□□ 0.12
BDNFP23560 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 PID1-202ENST00000392054 2745 ntTSL 2 BASIC15.81■□□□□ 0.12
BDNFP23560 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
BDNFP23560 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.8■□□□□ 0.12
BDNFP23560 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.8■□□□□ 0.12
BDNFP23560 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 HSPB1P2-201ENST00000448722 546 ntBASIC15.8■□□□□ 0.12
BDNFP23560 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.8■□□□□ 0.12
BDNFP23560 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.8■□□□□ 0.12
BDNFP23560 AL358472.3-201ENST00000608147 415 ntBASIC15.8■□□□□ 0.12
BDNFP23560 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.8■□□□□ 0.12
BDNFP23560 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
BDNFP23560 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
BDNFP23560 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
BDNFP23560 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
BDNFP23560 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.79■□□□□ 0.12
BDNFP23560 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
BDNFP23560 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.79■□□□□ 0.12
BDNFP23560 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.79■□□□□ 0.12
BDNFP23560 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms