Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.06□□□□□ -0.16
COL5A1P20908 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 AC073869.2-201ENST00000417338 1026 ntBASIC14.06□□□□□ -0.16
COL5A1P20908 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL5A1P20908 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.06□□□□□ -0.16
COL5A1P20908 ALG1L6P-201ENST00000515248 758 ntBASIC14.06□□□□□ -0.16
COL5A1P20908 AP000911.2-201ENST00000534330 502 ntBASIC14.06□□□□□ -0.16
COL5A1P20908 AP001184.1-201ENST00000637936 376 ntBASIC14.06□□□□□ -0.16
COL5A1P20908 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.06□□□□□ -0.16
COL5A1P20908 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL5A1P20908 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.05□□□□□ -0.16
COL5A1P20908 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 AC046158.3-201ENST00000624947 2558 ntBASIC14.05□□□□□ -0.16
COL5A1P20908 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
COL5A1P20908 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.05□□□□□ -0.16
COL5A1P20908 AC026410.1-201ENST00000507366 1101 ntBASIC14.05□□□□□ -0.16
COL5A1P20908 RPS23-204ENST00000507980 836 ntTSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 CR383656.3-201ENST00000551315 183 ntBASIC14.05□□□□□ -0.16
COL5A1P20908 C2orf69P1-201ENST00000563532 1093 ntBASIC14.05□□□□□ -0.16
COL5A1P20908 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC14.05□□□□□ -0.16
COL5A1P20908 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC14.05□□□□□ -0.16
COL5A1P20908 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
COL5A1P20908 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
COL5A1P20908 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL5A1P20908 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 DPY19L2P5-201ENST00000456300 331 ntBASIC14.04□□□□□ -0.16
COL5A1P20908 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.04□□□□□ -0.16
COL5A1P20908 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.04□□□□□ -0.16
COL5A1P20908 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.04□□□□□ -0.16
COL5A1P20908 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL5A1P20908 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 ACE3P-201ENST00000423435 1973 ntBASIC14.04□□□□□ -0.16
COL5A1P20908 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.04□□□□□ -0.16
COL5A1P20908 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
COL5A1P20908 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.04□□□□□ -0.16
COL5A1P20908 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 AC092580.1-201ENST00000433998 658 ntBASIC14.04□□□□□ -0.16
COL5A1P20908 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL5A1P20908 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL5A1P20908 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC14.04□□□□□ -0.16
COL5A1P20908 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.04□□□□□ -0.16
COL5A1P20908 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC14.04□□□□□ -0.16
COL5A1P20908 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.04□□□□□ -0.16
COL5A1P20908 AC124068.2-201ENST00000569473 1109 ntBASIC14.04□□□□□ -0.16
COL5A1P20908 MIR3180-2-201ENST00000581748 88 ntBASIC14.04□□□□□ -0.16
COL5A1P20908 DBP-202ENST00000593500 712 ntTSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL5A1P20908 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC14.03□□□□□ -0.16
COL5A1P20908 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms