Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PPT1-215ENST00000641471 2368 ntBASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 RN7SKP230-201ENST00000365642 335 ntBASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 GPAA1P2-201ENST00000417923 928 ntBASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 POM121L10P-201ENST00000436994 1285 ntBASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 AL138725.1-201ENST00000407347 1314 ntBASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 AC105917.1-201ENST00000506637 2539 ntBASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLCF1Q9UBD9 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC018735.1-201ENST00000437208 1502 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC132872.4-202ENST00000622924 2756 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AL354877.1-201ENST00000424412 413 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC004898.1-201ENST00000451057 766 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC100850.1-201ENST00000506768 649 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 MIR4683-201ENST00000579659 81 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AL358472.3-201ENST00000608147 415 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC002472.3-201ENST00000640124 621 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 INE2-201ENST00000630399 1874 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 AC097376.2-205ENST00000610159 5334 ntBASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLCF1Q9UBD9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms