Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.97□□□□□ -0.17
RNF4P78317 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RNF4P78317 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
RNF4P78317 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
RNF4P78317 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
RNF4P78317 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 FAM8A4P-201ENST00000435433 1213 ntBASIC13.96□□□□□ -0.17
RNF4P78317 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 RPS2P32-201ENST00000439199 892 ntBASIC13.96□□□□□ -0.17
RNF4P78317 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.96□□□□□ -0.17
RNF4P78317 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.96□□□□□ -0.17
RNF4P78317 BNIP3P42-201ENST00000454982 569 ntBASIC13.96□□□□□ -0.17
RNF4P78317 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 MESTP3-201ENST00000503460 968 ntBASIC13.96□□□□□ -0.17
RNF4P78317 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.96□□□□□ -0.17
RNF4P78317 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.96□□□□□ -0.17
RNF4P78317 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.96□□□□□ -0.17
RNF4P78317 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 BNIP3P29-201ENST00000598302 571 ntBASIC13.96□□□□□ -0.17
RNF4P78317 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.96□□□□□ -0.17
RNF4P78317 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 AC011447.5-201ENST00000616168 564 ntBASIC13.96□□□□□ -0.17
RNF4P78317 AC138466.3-201ENST00000619983 221 ntBASIC13.96□□□□□ -0.17
RNF4P78317 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.96□□□□□ -0.17
RNF4P78317 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RNF4P78317 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.96□□□□□ -0.17
RNF4P78317 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.96□□□□□ -0.18
RNF4P78317 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RNF4P78317 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RNF4P78317 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RNF4P78317 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RNF4P78317 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
RNF4P78317 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.96□□□□□ -0.18
RNF4P78317 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RNF4P78317 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RNF4P78317 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RNF4P78317 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RNF4P78317 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.95□□□□□ -0.18
RNF4P78317 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.95□□□□□ -0.18
RNF4P78317 FAM21FP-201ENST00000426241 1131 ntBASIC13.95□□□□□ -0.18
RNF4P78317 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms