Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SMARCA1P28370 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
SMARCA1P28370 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 MIR663B-201ENST00000408361 115 ntBASIC17.16■□□□□ 0.34
SMARCA1P28370 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 ACTBP11-201ENST00000436287 1126 ntBASIC17.16■□□□□ 0.34
SMARCA1P28370 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.16■□□□□ 0.34
SMARCA1P28370 AL591846.1-201ENST00000451736 433 ntBASIC17.16■□□□□ 0.34
SMARCA1P28370 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.16■□□□□ 0.34
SMARCA1P28370 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.16■□□□□ 0.34
SMARCA1P28370 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.16■□□□□ 0.34
SMARCA1P28370 AC009955.4-201ENST00000597192 544 ntBASIC17.16■□□□□ 0.34
SMARCA1P28370 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMARCA1P28370 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.16■□□□□ 0.34
SMARCA1P28370 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.16■□□□□ 0.34
SMARCA1P28370 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.16■□□□□ 0.34
SMARCA1P28370 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 AL136172.1-201ENST00000598590 1394 ntBASIC17.15■□□□□ 0.34
SMARCA1P28370 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 MIR326-201ENST00000362220 95 ntBASIC17.15■□□□□ 0.34
SMARCA1P28370 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.15■□□□□ 0.34
SMARCA1P28370 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.15■□□□□ 0.34
SMARCA1P28370 FAM58BP-201ENST00000439056 645 ntBASIC17.15■□□□□ 0.34
SMARCA1P28370 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.15■□□□□ 0.34
SMARCA1P28370 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 MIR4783-201ENST00000580343 82 ntBASIC17.15■□□□□ 0.34
SMARCA1P28370 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 AC027601.3-201ENST00000622907 509 ntBASIC17.15■□□□□ 0.34
SMARCA1P28370 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SMARCA1P28370 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SMARCA1P28370 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SMARCA1P28370 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.15■□□□□ 0.34
SMARCA1P28370 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.34
SMARCA1P28370 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
SMARCA1P28370 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SMARCA1P28370 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.14■□□□□ 0.34
SMARCA1P28370 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.14■□□□□ 0.33
SMARCA1P28370 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.14■□□□□ 0.33
SMARCA1P28370 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.14■□□□□ 0.33
SMARCA1P28370 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SMARCA1P28370 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.14■□□□□ 0.33
SMARCA1P28370 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.14■□□□□ 0.33
SMARCA1P28370 FAM8A2P-201ENST00000528813 1142 ntBASIC17.14■□□□□ 0.33
SMARCA1P28370 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMARCA1P28370 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms