Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
BDNFP23560 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.85■□□□□ 0.13
BDNFP23560 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 AC023157.3-201ENST00000619086 2088 ntBASIC15.85■□□□□ 0.13
BDNFP23560 AC009093.2-202ENST00000620513 2079 ntBASIC15.85■□□□□ 0.13
BDNFP23560 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.85■□□□□ 0.13
BDNFP23560 AC007969.1-201ENST00000433675 447 ntBASIC15.85■□□□□ 0.13
BDNFP23560 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.85■□□□□ 0.13
BDNFP23560 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC15.85■□□□□ 0.13
BDNFP23560 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.85■□□□□ 0.13
BDNFP23560 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
BDNFP23560 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.85■□□□□ 0.13
BDNFP23560 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.85■□□□□ 0.13
BDNFP23560 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.85■□□□□ 0.13
BDNFP23560 AC138696.2-201ENST00000607376 223 ntBASIC15.85■□□□□ 0.13
BDNFP23560 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.85■□□□□ 0.13
BDNFP23560 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.85■□□□□ 0.13
BDNFP23560 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.85■□□□□ 0.13
BDNFP23560 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.85■□□□□ 0.13
BDNFP23560 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.85■□□□□ 0.13
BDNFP23560 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
BDNFP23560 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 RN7SKP230-201ENST00000365642 335 ntBASIC15.84■□□□□ 0.13
BDNFP23560 AL136309.1-201ENST00000403917 691 ntBASIC15.84■□□□□ 0.13
BDNFP23560 RN7SKP175-201ENST00000408472 289 ntBASIC15.84■□□□□ 0.13
BDNFP23560 CHMP1AP1-201ENST00000445563 662 ntBASIC15.84■□□□□ 0.13
BDNFP23560 HIST2H2BB-201ENST00000449108 381 ntBASIC15.84■□□□□ 0.13
BDNFP23560 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 MIR4525-201ENST00000580000 75 ntBASIC15.84■□□□□ 0.13
BDNFP23560 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.84■□□□□ 0.13
BDNFP23560 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
BDNFP23560 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.84■□□□□ 0.13
BDNFP23560 AL138725.1-201ENST00000407347 1314 ntBASIC15.84■□□□□ 0.13
BDNFP23560 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
BDNFP23560 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.84■□□□□ 0.13
BDNFP23560 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.84■□□□□ 0.13
BDNFP23560 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.84■□□□□ 0.13
BDNFP23560 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
BDNFP23560 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
BDNFP23560 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
BDNFP23560 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
BDNFP23560 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms