Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC007389.4-201ENST00000454674 793 ntBASIC17.75■□□□□ 0.43
HMGB1P09429 FO681548.1-201ENST00000455617 1132 ntBASIC17.75■□□□□ 0.43
HMGB1P09429 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGB1P09429 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 AL358472.5-202ENST00000641448 1267 ntBASIC17.75■□□□□ 0.43
HMGB1P09429 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 AL359183.1-201ENST00000623796 2132 ntBASIC17.74■□□□□ 0.43
HMGB1P09429 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 AL354702.1-201ENST00000442006 1960 ntBASIC17.74■□□□□ 0.43
HMGB1P09429 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
HMGB1P09429 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.74■□□□□ 0.43
HMGB1P09429 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.74■□□□□ 0.43
HMGB1P09429 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 AC015936.2-201ENST00000593177 259 ntBASIC17.74■□□□□ 0.43
HMGB1P09429 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
HMGB1P09429 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
HMGB1P09429 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB1P09429 AL138725.1-201ENST00000407347 1314 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HMGB1P09429 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 AC023908.3-201ENST00000564211 3047 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 AL161772.1-201ENST00000610494 4412 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HMGB1P09429 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGB1P09429 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 AC005229.1-201ENST00000392885 409 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGB1P09429 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HMGB1P09429 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HMGB1P09429 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGB1P09429 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGB1P09429 RN7SL837P-201ENST00000463010 287 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGB1P09429 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGB1P09429 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 MIR3197-201ENST00000582241 73 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 ENPP7P14-201ENST00000621765 1040 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 AC132938.4-201ENST00000623835 848 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HMGB1P09429 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.73■□□□□ 0.43
HMGB1P09429 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HMGB1P09429 AL009178.2-201ENST00000597278 2719 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 AL138709.1-201ENST00000614840 1693 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB1P09429 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms