Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DQA1P01909 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 RPS2P28-201ENST00000314255 741 ntBASIC11.4□□□□□ -0.58
HLA-DQA1P01909 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 KRT18P67-201ENST00000432816 1264 ntBASIC11.4□□□□□ -0.58
HLA-DQA1P01909 TPM4P1-201ENST00000436100 807 ntBASIC11.4□□□□□ -0.58
HLA-DQA1P01909 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 PHKG1P2-201ENST00000457537 863 ntBASIC11.4□□□□□ -0.58
HLA-DQA1P01909 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.4□□□□□ -0.58
HLA-DQA1P01909 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 PAM16-208ENST00000573553 722 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 FHL2-212ENST00000607522 759 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DQA1P01909 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DQA1P01909 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 CROT-203ENST00000419147 2959 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DQA1P01909 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms