Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 MIR1202-201ENST00000408529 83 ntBASIC15.55■□□□□ 0.08
RPRD1AQ96P16 AC099336.1-201ENST00000417053 1171 ntBASIC15.55■□□□□ 0.08
RPRD1AQ96P16 CD8B2-202ENST00000417670 633 ntBASIC15.55■□□□□ 0.08
RPRD1AQ96P16 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RPRD1AQ96P16 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 CSF2RBP1-201ENST00000447905 391 ntBASIC15.54■□□□□ 0.08
RPRD1AQ96P16 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RPRD1AQ96P16 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 LINC00528-201ENST00000600723 2160 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 AC023090.2-201ENST00000625182 2110 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 CLUHP2-201ENST00000426660 1303 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 FAM8A4P-201ENST00000435433 1213 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 BNIP3P42-201ENST00000454982 569 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 AC023310.1-201ENST00000554836 735 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 BNIP3P29-201ENST00000598302 571 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 AC011447.5-201ENST00000616168 564 ntBASIC15.53■□□□□ 0.08
RPRD1AQ96P16 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
RPRD1AQ96P16 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms