Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.82□□□□□ -0.04
SHMT2P34897 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 ACTBP8-201ENST00000403258 1108 ntBASIC14.82□□□□□ -0.04
SHMT2P34897 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 U91328.1-201ENST00000437528 223 ntBASIC14.82□□□□□ -0.04
SHMT2P34897 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.82□□□□□ -0.04
SHMT2P34897 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.82□□□□□ -0.04
SHMT2P34897 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SHMT2P34897 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 KRT8P35-201ENST00000483942 1338 ntBASIC14.82□□□□□ -0.04
SHMT2P34897 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 AC117489.1-201ENST00000625169 3217 ntBASIC14.82□□□□□ -0.04
SHMT2P34897 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.82□□□□□ -0.04
SHMT2P34897 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
SHMT2P34897 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.81□□□□□ -0.04
SHMT2P34897 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.81□□□□□ -0.04
SHMT2P34897 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SHMT2P34897 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SHMT2P34897 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SHMT2P34897 BOLA2P3-201ENST00000404566 256 ntBASIC14.81□□□□□ -0.04
SHMT2P34897 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.81□□□□□ -0.04
SHMT2P34897 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.81□□□□□ -0.04
SHMT2P34897 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.81□□□□□ -0.04
SHMT2P34897 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.81□□□□□ -0.04
SHMT2P34897 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.81□□□□□ -0.04
SHMT2P34897 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
SHMT2P34897 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
SHMT2P34897 AC023024.2-201ENST00000623561 1993 ntBASIC14.81□□□□□ -0.04
SHMT2P34897 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.81□□□□□ -0.04
SHMT2P34897 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.81□□□□□ -0.04
SHMT2P34897 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
SHMT2P34897 KRT8P14-201ENST00000414254 1442 ntBASIC14.81□□□□□ -0.04
SHMT2P34897 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
SHMT2P34897 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHMT2P34897 AJ011931.1-201ENST00000618749 2492 ntBASIC14.81□□□□□ -0.04
SHMT2P34897 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.81□□□□□ -0.04
SHMT2P34897 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 MSTO2P-201ENST00000314835 1709 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
SHMT2P34897 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.8□□□□□ -0.04
SHMT2P34897 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHMT2P34897 AC234783.1-201ENST00000441761 496 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.8□□□□□ -0.04
SHMT2P34897 BCRP2-202ENST00000447763 634 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.8□□□□□ -0.04
SHMT2P34897 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
SHMT2P34897 BCRP6-201ENST00000510112 632 ntBASIC14.8□□□□□ -0.04
SHMT2P34897 BCRP7-201ENST00000511549 544 ntBASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms