Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AC016694.1-201ENST00000434179 700 ntBASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.35■□□□□ 0.05
SHROOM3Q8TF72 AC011840.2-201ENST00000563063 1520 ntBASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AL360270.3-201ENST00000609118 1348 ntBASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 BCRP2-202ENST00000447763 634 ntBASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 BCRP6-201ENST00000510112 632 ntBASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 BCRP7-201ENST00000511549 544 ntBASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SHROOM3Q8TF72 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 CNN2P8-201ENST00000421872 913 ntBASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 AP005019.2-201ENST00000615104 511 ntBASIC15.33■□□□□ 0.05
SHROOM3Q8TF72 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 TUBB1P2-201ENST00000422712 1306 ntBASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 TUBB1P1-201ENST00000503144 1300 ntBASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 AL354989.2-201ENST00000435838 1540 ntBASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 AL138709.1-201ENST00000614840 1693 ntBASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
SHROOM3Q8TF72 ACTG1P3-201ENST00000431775 1114 ntBASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms