Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.93■□□□□ 0.3
CIITAP33076 EEF1DP1-201ENST00000585891 896 ntBASIC16.93■□□□□ 0.3
CIITAP33076 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.93■□□□□ 0.3
CIITAP33076 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CIITAP33076 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CIITAP33076 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CIITAP33076 KRT8P4-201ENST00000509735 1454 ntBASIC16.93■□□□□ 0.3
CIITAP33076 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CIITAP33076 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.93■□□□□ 0.3
CIITAP33076 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
CIITAP33076 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CIITAP33076 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.92■□□□□ 0.3
CIITAP33076 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.92■□□□□ 0.3
CIITAP33076 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.92■□□□□ 0.3
CIITAP33076 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 RPL13AP20-201ENST00000459725 609 ntBASIC16.92■□□□□ 0.3
CIITAP33076 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CIITAP33076 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 FAM86HP-204ENST00000513466 959 ntBASIC16.92■□□□□ 0.3
CIITAP33076 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.92■□□□□ 0.3
CIITAP33076 RN7SL560P-201ENST00000577943 264 ntBASIC16.92■□□□□ 0.3
CIITAP33076 MIR4683-201ENST00000579659 81 ntBASIC16.92■□□□□ 0.3
CIITAP33076 MIR4741-201ENST00000579822 90 ntBASIC16.92■□□□□ 0.3
CIITAP33076 AL358472.3-201ENST00000608147 415 ntBASIC16.92■□□□□ 0.3
CIITAP33076 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.92■□□□□ 0.3
CIITAP33076 AC002472.3-201ENST00000640124 621 ntBASIC16.92■□□□□ 0.3
CIITAP33076 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CIITAP33076 CICP23-201ENST00000605013 2741 ntBASIC16.92■□□□□ 0.3
CIITAP33076 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.92■□□□□ 0.3
CIITAP33076 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
CIITAP33076 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CIITAP33076 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CIITAP33076 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CIITAP33076 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 AC015818.8-201ENST00000587907 1519 ntBASIC16.91■□□□□ 0.3
CIITAP33076 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CIITAP33076 MIR1908-201ENST00000410394 80 ntBASIC16.91■□□□□ 0.3
CIITAP33076 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.91■□□□□ 0.3
CIITAP33076 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.91■□□□□ 0.3
CIITAP33076 GOLGA2P4-201ENST00000441462 777 ntBASIC16.91■□□□□ 0.3
CIITAP33076 HIST2H2BB-201ENST00000449108 381 ntBASIC16.91■□□□□ 0.3
CIITAP33076 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.91■□□□□ 0.3
CIITAP33076 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.91■□□□□ 0.3
CIITAP33076 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.91■□□□□ 0.3
CIITAP33076 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.91■□□□□ 0.3
CIITAP33076 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.91■□□□□ 0.3
CIITAP33076 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CIITAP33076 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms