Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 LINC01124-201ENST00000409786 2117 ntBASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC30.18■■■□□ 2.42
TRIM35Q9UPQ4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 AL022069.1-201ENST00000568025 1636 ntBASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
TRIM35Q9UPQ4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.16■■■□□ 2.42
TRIM35Q9UPQ4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC30.16■■■□□ 2.42
TRIM35Q9UPQ4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
TRIM35Q9UPQ4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC30.16■■■□□ 2.42
TRIM35Q9UPQ4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
TRIM35Q9UPQ4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
TRIM35Q9UPQ4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM35Q9UPQ4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
TRIM35Q9UPQ4 AC010997.5-201ENST00000609182 354 ntBASIC30.15■■■□□ 2.42
TRIM35Q9UPQ4 MIR6722-201ENST00000617286 78 ntBASIC30.15■■■□□ 2.42
TRIM35Q9UPQ4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.15■■■□□ 2.42
TRIM35Q9UPQ4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM35Q9UPQ4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
TRIM35Q9UPQ4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
TRIM35Q9UPQ4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
TRIM35Q9UPQ4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.14■■■□□ 2.42
TRIM35Q9UPQ4 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.14■■■□□ 2.42
TRIM35Q9UPQ4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
TRIM35Q9UPQ4 LINC00543-201ENST00000567234 1845 ntBASIC30.14■■■□□ 2.42
TRIM35Q9UPQ4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC30.14■■■□□ 2.42
TRIM35Q9UPQ4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 KRT16P3-201ENST00000439127 1283 ntBASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
TRIM35Q9UPQ4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
TRIM35Q9UPQ4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
TRIM35Q9UPQ4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
TRIM35Q9UPQ4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC30.12■■■□□ 2.41
TRIM35Q9UPQ4 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
TRIM35Q9UPQ4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM35Q9UPQ4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC30.11■■■□□ 2.41
TRIM35Q9UPQ4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.11■■■□□ 2.41
TRIM35Q9UPQ4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.11■■■□□ 2.41
TRIM35Q9UPQ4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
TRIM35Q9UPQ4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM35Q9UPQ4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
TRIM35Q9UPQ4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
TRIM35Q9UPQ4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC30.1■■■□□ 2.41
TRIM35Q9UPQ4 MTDHP2-201ENST00000601468 714 ntBASIC30.1■■■□□ 2.41
TRIM35Q9UPQ4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.1■■■□□ 2.41
TRIM35Q9UPQ4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
TRIM35Q9UPQ4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
TRIM35Q9UPQ4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
TRIM35Q9UPQ4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
TRIM35Q9UPQ4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.09■■■□□ 2.41
TRIM35Q9UPQ4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.09■■■□□ 2.41
TRIM35Q9UPQ4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.08■■■□□ 2.41
TRIM35Q9UPQ4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
TRIM35Q9UPQ4 AL161729.1-201ENST00000604104 1402 ntBASIC30.08■■■□□ 2.41
TRIM35Q9UPQ4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
TRIM35Q9UPQ4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
TRIM35Q9UPQ4 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
TRIM35Q9UPQ4 AC004812.2-201ENST00000611079 2094 ntBASIC30.07■■■□□ 2.4
TRIM35Q9UPQ4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC30.07■■■□□ 2.4
TRIM35Q9UPQ4 CD72-202ENST00000378430 585 ntTSL 3 BASIC30.07■■■□□ 2.4
TRIM35Q9UPQ4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.07■■■□□ 2.4
TRIM35Q9UPQ4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC30.07■■■□□ 2.4
TRIM35Q9UPQ4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
TRIM35Q9UPQ4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
TRIM35Q9UPQ4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
TRIM35Q9UPQ4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC30.06■■■□□ 2.4
TRIM35Q9UPQ4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
TRIM35Q9UPQ4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
TRIM35Q9UPQ4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
TRIM35Q9UPQ4 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
TRIM35Q9UPQ4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
TRIM35Q9UPQ4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC30.04■■■□□ 2.4
TRIM35Q9UPQ4 AC141586.4-201ENST00000624558 1573 ntBASIC30.04■■■□□ 2.4
TRIM35Q9UPQ4 MIR6724-1-201ENST00000616420 92 ntBASIC30.04■■■□□ 2.4
TRIM35Q9UPQ4 MIR6724-2-201ENST00000616483 92 ntBASIC30.04■■■□□ 2.4
TRIM35Q9UPQ4 MIR6724-4-201ENST00000617390 92 ntBASIC30.04■■■□□ 2.4
TRIM35Q9UPQ4 MIR6724-3-201ENST00000622482 92 ntBASIC30.04■■■□□ 2.4
TRIM35Q9UPQ4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
TRIM35Q9UPQ4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
TRIM35Q9UPQ4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
TRIM35Q9UPQ4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
TRIM35Q9UPQ4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.03■■■□□ 2.4
TRIM35Q9UPQ4 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
TRIM35Q9UPQ4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
TRIM35Q9UPQ4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms