Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
LRCH3Q96II8 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
LRCH3Q96II8 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.13■■□□□ 1.61
LRCH3Q96II8 AC080038.1-201ENST00000611274 1154 ntBASIC25.13■■□□□ 1.61
LRCH3Q96II8 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.13■■□□□ 1.61
LRCH3Q96II8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
LRCH3Q96II8 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
LRCH3Q96II8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
LRCH3Q96II8 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
LRCH3Q96II8 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
LRCH3Q96II8 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
LRCH3Q96II8 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.12■■□□□ 1.61
LRCH3Q96II8 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
LRCH3Q96II8 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
LRCH3Q96II8 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.12■■□□□ 1.61
LRCH3Q96II8 AL355802.2-201ENST00000402069 882 ntBASIC25.11■■□□□ 1.61
LRCH3Q96II8 AC123595.1-201ENST00000440769 1046 ntBASIC25.11■■□□□ 1.61
LRCH3Q96II8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC25.11■■□□□ 1.61
LRCH3Q96II8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
LRCH3Q96II8 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.11■■□□□ 1.61
LRCH3Q96II8 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
LRCH3Q96II8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
LRCH3Q96II8 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.11■■□□□ 1.61
LRCH3Q96II8 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.1■■□□□ 1.61
LRCH3Q96II8 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.1■■□□□ 1.61
LRCH3Q96II8 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.1■■□□□ 1.61
LRCH3Q96II8 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC25.1■■□□□ 1.61
LRCH3Q96II8 CCDC92B-201ENST00000575506 885 ntBASIC25.1■■□□□ 1.61
LRCH3Q96II8 RAP2CP1-201ENST00000605103 478 ntBASIC25.1■■□□□ 1.61
LRCH3Q96II8 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.1■■□□□ 1.61
LRCH3Q96II8 AC136469.2-201ENST00000623944 1028 ntBASIC25.1■■□□□ 1.61
LRCH3Q96II8 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
LRCH3Q96II8 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.1■■□□□ 1.61
LRCH3Q96II8 AL449106.1-201ENST00000608517 1980 ntBASIC25.09■■□□□ 1.61
LRCH3Q96II8 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRCH3Q96II8 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRCH3Q96II8 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.09■■□□□ 1.61
LRCH3Q96II8 AC027612.3-201ENST00000413684 1047 ntBASIC25.09■■□□□ 1.61
LRCH3Q96II8 BX842568.3-201ENST00000418104 571 ntBASIC25.09■■□□□ 1.61
LRCH3Q96II8 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC25.09■■□□□ 1.61
LRCH3Q96II8 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRCH3Q96II8 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.09■■□□□ 1.61
LRCH3Q96II8 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
LRCH3Q96II8 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRCH3Q96II8 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
LRCH3Q96II8 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.09■■□□□ 1.61
LRCH3Q96II8 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC25.08■■□□□ 1.61
LRCH3Q96II8 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC25.08■■□□□ 1.61
LRCH3Q96II8 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
LRCH3Q96II8 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.08■■□□□ 1.61
LRCH3Q96II8 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
LRCH3Q96II8 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.07■■□□□ 1.6
LRCH3Q96II8 BX255925.1-201ENST00000566954 1854 ntBASIC25.07■■□□□ 1.6
LRCH3Q96II8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
LRCH3Q96II8 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
LRCH3Q96II8 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
LRCH3Q96II8 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
LRCH3Q96II8 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
LRCH3Q96II8 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
LRCH3Q96II8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC25.06■■□□□ 1.6
LRCH3Q96II8 TSPY20P-201ENST00000450910 630 ntBASIC25.06■■□□□ 1.6
LRCH3Q96II8 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.06■■□□□ 1.6
LRCH3Q96II8 MIR6084-201ENST00000622012 110 ntBASIC25.06■■□□□ 1.6
LRCH3Q96II8 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
LRCH3Q96II8 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
LRCH3Q96II8 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.05■■□□□ 1.6
LRCH3Q96II8 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
LRCH3Q96II8 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.05■■□□□ 1.6
LRCH3Q96II8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRCH3Q96II8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC25.05■■□□□ 1.6
LRCH3Q96II8 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.05■■□□□ 1.6
LRCH3Q96II8 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC25.05■■□□□ 1.6
LRCH3Q96II8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRCH3Q96II8 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRCH3Q96II8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRCH3Q96II8 AC005703.6-201ENST00000623265 1329 ntBASIC25.05■■□□□ 1.6
LRCH3Q96II8 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
LRCH3Q96II8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.05■■□□□ 1.6
LRCH3Q96II8 DRD5P2-201ENST00000421395 2012 ntBASIC25.04■■□□□ 1.6
LRCH3Q96II8 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LRCH3Q96II8 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.04■■□□□ 1.6
LRCH3Q96II8 CDCA4P2-201ENST00000441182 718 ntBASIC25.04■■□□□ 1.6
LRCH3Q96II8 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
LRCH3Q96II8 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.04■■□□□ 1.6
LRCH3Q96II8 MAP2K4P1-201ENST00000438453 1195 ntBASIC25.03■■□□□ 1.6
LRCH3Q96II8 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
LRCH3Q96II8 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LRCH3Q96II8 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC25.03■■□□□ 1.6
LRCH3Q96II8 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
LRCH3Q96II8 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
LRCH3Q96II8 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.03■■□□□ 1.6
LRCH3Q96II8 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
LRCH3Q96II8 CD99P1-205ENST00000527459 561 ntBASIC25.02■■□□□ 1.6
LRCH3Q96II8 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC25.02■■□□□ 1.6
LRCH3Q96II8 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.02■■□□□ 1.6
LRCH3Q96II8 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC25.02■■□□□ 1.6
LRCH3Q96II8 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.01■■□□□ 1.59
LRCH3Q96II8 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
LRCH3Q96II8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
LRCH3Q96II8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms