Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
USP54Q70EL1 AC105265.2-201ENST00000467189 838 ntBASIC31.2■■■□□ 2.59
USP54Q70EL1 AC011298.3-201ENST00000615796 283 ntBASIC31.2■■■□□ 2.59
USP54Q70EL1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
USP54Q70EL1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.59
USP54Q70EL1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.58
USP54Q70EL1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC31.2■■■□□ 2.58
USP54Q70EL1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
USP54Q70EL1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.2■■■□□ 2.58
USP54Q70EL1 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP54Q70EL1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
USP54Q70EL1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC31.19■■■□□ 2.58
USP54Q70EL1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC31.19■■■□□ 2.58
USP54Q70EL1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC31.19■■■□□ 2.58
USP54Q70EL1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
USP54Q70EL1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
USP54Q70EL1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC31.18■■■□□ 2.58
USP54Q70EL1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
USP54Q70EL1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
USP54Q70EL1 GRAMD4P4-201ENST00000613563 1115 ntBASIC31.17■■■□□ 2.58
USP54Q70EL1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP54Q70EL1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC31.16■■■□□ 2.58
USP54Q70EL1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
USP54Q70EL1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP54Q70EL1 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP54Q70EL1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
USP54Q70EL1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP54Q70EL1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC31.15■■■□□ 2.58
USP54Q70EL1 SERBP1P1-201ENST00000396021 1160 ntBASIC31.15■■■□□ 2.58
USP54Q70EL1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC31.15■■■□□ 2.58
USP54Q70EL1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
USP54Q70EL1 MIR4767-201ENST00000582827 78 ntBASIC31.15■■■□□ 2.58
USP54Q70EL1 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP54Q70EL1 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP54Q70EL1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
USP54Q70EL1 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
USP54Q70EL1 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.58
USP54Q70EL1 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC31.14■■■□□ 2.58
USP54Q70EL1 AL355001.2-201ENST00000620617 1191 ntBASIC31.14■■■□□ 2.58
USP54Q70EL1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
USP54Q70EL1 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP54Q70EL1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC31.13■■■□□ 2.57
USP54Q70EL1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP54Q70EL1 REST-206ENST00000612429 1376 ntTSL 5 BASIC31.13■■■□□ 2.57
USP54Q70EL1 REST-207ENST00000616975 1370 ntTSL 5 BASIC31.13■■■□□ 2.57
USP54Q70EL1 AL136967.2-201ENST00000623968 743 ntBASIC31.13■■■□□ 2.57
USP54Q70EL1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
USP54Q70EL1 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.57
USP54Q70EL1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP54Q70EL1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC31.12■■■□□ 2.57
USP54Q70EL1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP54Q70EL1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP54Q70EL1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP54Q70EL1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
USP54Q70EL1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP54Q70EL1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
USP54Q70EL1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC31.11■■■□□ 2.57
USP54Q70EL1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP54Q70EL1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC31.1■■■□□ 2.57
USP54Q70EL1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
USP54Q70EL1 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP54Q70EL1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP54Q70EL1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
USP54Q70EL1 AL138724.1-201ENST00000606771 1088 ntBASIC31.09■■■□□ 2.57
USP54Q70EL1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP54Q70EL1 AC027682.1-201ENST00000562846 899 ntBASIC31.09■■■□□ 2.57
USP54Q70EL1 AC009102.2-201ENST00000606772 1639 ntBASIC31.09■■■□□ 2.57
USP54Q70EL1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC31.08■■■□□ 2.57
USP54Q70EL1 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP54Q70EL1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP54Q70EL1 AC091305.1-201ENST00000479476 895 ntBASIC31.07■■■□□ 2.56
USP54Q70EL1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
USP54Q70EL1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP54Q70EL1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC31.06■■■□□ 2.56
USP54Q70EL1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC31.06■■■□□ 2.56
USP54Q70EL1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC31.06■■■□□ 2.56
USP54Q70EL1 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
USP54Q70EL1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP54Q70EL1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USP54Q70EL1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC31.05■■■□□ 2.56
USP54Q70EL1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
USP54Q70EL1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC31.05■■■□□ 2.56
USP54Q70EL1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
USP54Q70EL1 AL022069.1-201ENST00000568025 1636 ntBASIC31.04■■■□□ 2.56
USP54Q70EL1 AC006455.2-201ENST00000429931 906 ntBASIC31.04■■■□□ 2.56
USP54Q70EL1 AC092171.4-201ENST00000609130 632 ntBASIC31.04■■■□□ 2.56
USP54Q70EL1 AC136469.2-201ENST00000623944 1028 ntBASIC31.04■■■□□ 2.56
USP54Q70EL1 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC31.04■■■□□ 2.56
USP54Q70EL1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP54Q70EL1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP54Q70EL1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC31.03■■■□□ 2.56
USP54Q70EL1 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
USP54Q70EL1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP54Q70EL1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC31.03■■■□□ 2.56
USP54Q70EL1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP54Q70EL1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP54Q70EL1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC31.03■■■□□ 2.56
USP54Q70EL1 AC099791.2-201ENST00000605725 427 ntBASIC31.03■■■□□ 2.56
USP54Q70EL1 SYT6-210ENST00000641643 1587 ntBASIC31.03■■■□□ 2.56
USP54Q70EL1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms