Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 AC055811.4-201ENST00000624039 1754 ntBASIC16.37■□□□□ 0.21
CCDC42Q96M95 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 RPSAP43-201ENST00000402237 625 ntBASIC16.37■□□□□ 0.21
CCDC42Q96M95 TPT1P11-201ENST00000458482 498 ntBASIC16.37■□□□□ 0.21
CCDC42Q96M95 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC42Q96M95 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC42Q96M95 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 AC018665.1-201ENST00000622927 1362 ntBASIC16.36■□□□□ 0.21
CCDC42Q96M95 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.36■□□□□ 0.21
CCDC42Q96M95 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC42Q96M95 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AC254562.1-201ENST00000417586 456 ntBASIC16.35■□□□□ 0.21
CCDC42Q96M95 UPF3AP3-201ENST00000420996 769 ntBASIC16.35■□□□□ 0.21
CCDC42Q96M95 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms