Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB1P09429 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
HMGB1P09429 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.83■□□□□ 0.45
HMGB1P09429 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB1P09429 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.83■□□□□ 0.45
HMGB1P09429 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB1P09429 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
HMGB1P09429 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
HMGB1P09429 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
HMGB1P09429 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB1P09429 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB1P09429 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB1P09429 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 AC113367.3-201ENST00000508316 1912 ntBASIC17.83■□□□□ 0.44
HMGB1P09429 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB1P09429 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 AP006294.1-201ENST00000415407 339 ntBASIC17.83■□□□□ 0.44
HMGB1P09429 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.83■□□□□ 0.44
HMGB1P09429 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB1P09429 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
HMGB1P09429 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.83■□□□□ 0.44
HMGB1P09429 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.83■□□□□ 0.44
HMGB1P09429 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB1P09429 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
HMGB1P09429 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
HMGB1P09429 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB1P09429 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB1P09429 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HMGB1P09429 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGB1P09429 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HMGB1P09429 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGB1P09429 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGB1P09429 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGB1P09429 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HMGB1P09429 AC145098.2-201ENST00000623593 3026 ntBASIC17.82■□□□□ 0.44
HMGB1P09429 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HMGB1P09429 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
HMGB1P09429 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGB1P09429 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGB1P09429 BAATP1-201ENST00000412284 1225 ntBASIC17.82■□□□□ 0.44
HMGB1P09429 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 AC012441.1-201ENST00000446669 685 ntBASIC17.82■□□□□ 0.44
HMGB1P09429 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.82■□□□□ 0.44
HMGB1P09429 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 PTP4A1P2-201ENST00000546033 454 ntBASIC17.82■□□□□ 0.44
HMGB1P09429 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGB1P09429 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGB1P09429 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
HMGB1P09429 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
HMGB1P09429 AC138761.1-201ENST00000584393 385 ntBASIC17.82■□□□□ 0.44
HMGB1P09429 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGB1P09429 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
HMGB1P09429 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
HMGB1P09429 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
HMGB1P09429 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB1P09429 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
HMGB1P09429 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
HMGB1P09429 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB1P09429 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB1P09429 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms