Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 SERBP1P3-201ENST00000459980 809 ntBASIC14.91□□□□□ -0.02
VPS4BO75351 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 DOC2GP-202ENST00000514950 1163 ntBASIC14.91□□□□□ -0.02
VPS4BO75351 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS4BO75351 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
VPS4BO75351 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
VPS4BO75351 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
VPS4BO75351 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS4BO75351 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS4BO75351 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS4BO75351 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VPS4BO75351 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VPS4BO75351 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 AC007787.1-201ENST00000588095 1583 ntBASIC14.9□□□□□ -0.02
VPS4BO75351 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
VPS4BO75351 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 TTTY23B-201ENST00000442790 549 ntBASIC14.9□□□□□ -0.02
VPS4BO75351 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS4BO75351 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS4BO75351 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS4BO75351 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.9□□□□□ -0.02
VPS4BO75351 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
VPS4BO75351 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
VPS4BO75351 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS4BO75351 AC007431.3-201ENST00000623221 587 ntBASIC14.9□□□□□ -0.02
VPS4BO75351 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS4BO75351 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
VPS4BO75351 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS4BO75351 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VPS4BO75351 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS4BO75351 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS4BO75351 REXO1L4P-201ENST00000605109 1937 ntBASIC14.9□□□□□ -0.02
VPS4BO75351 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
VPS4BO75351 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS4BO75351 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4BO75351 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms