Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC16.48■□□□□ 0.23
RNF40O75150 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC16.48■□□□□ 0.23
RNF40O75150 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF40O75150 KRT17P8-201ENST00000540749 863 ntBASIC16.48■□□□□ 0.23
RNF40O75150 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.48■□□□□ 0.23
RNF40O75150 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.48■□□□□ 0.23
RNF40O75150 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.48■□□□□ 0.23
RNF40O75150 MIR6069-201ENST00000620069 79 ntBASIC16.48■□□□□ 0.23
RNF40O75150 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
RNF40O75150 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.48■□□□□ 0.23
RNF40O75150 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
RNF40O75150 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF40O75150 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF40O75150 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF40O75150 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF40O75150 MEP1AP4-201ENST00000423244 1087 ntBASIC16.47■□□□□ 0.23
RNF40O75150 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.47■□□□□ 0.23
RNF40O75150 AL139010.1-201ENST00000454878 894 ntBASIC16.47■□□□□ 0.23
RNF40O75150 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.47■□□□□ 0.23
RNF40O75150 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF40O75150 AC123567.1-201ENST00000548294 1261 ntBASIC16.47■□□□□ 0.23
RNF40O75150 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.47■□□□□ 0.23
RNF40O75150 RAB43P1-201ENST00000561790 589 ntBASIC16.47■□□□□ 0.23
RNF40O75150 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.47■□□□□ 0.23
RNF40O75150 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
RNF40O75150 MIR6805-201ENST00000615055 62 ntBASIC16.47■□□□□ 0.23
RNF40O75150 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.47■□□□□ 0.23
RNF40O75150 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF40O75150 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.47■□□□□ 0.23
RNF40O75150 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
RNF40O75150 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
RNF40O75150 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.47■□□□□ 0.23
RNF40O75150 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
RNF40O75150 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
RNF40O75150 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
RNF40O75150 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF40O75150 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF40O75150 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
RNF40O75150 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF40O75150 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
RNF40O75150 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF40O75150 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RNF40O75150 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF40O75150 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.46■□□□□ 0.23
RNF40O75150 TTTY23B-201ENST00000442790 549 ntBASIC16.46■□□□□ 0.23
RNF40O75150 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF40O75150 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF40O75150 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF40O75150 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF40O75150 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF40O75150 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms