Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 AC136621.1-201ENST00000624017 2304 ntBASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TM9SF3Q9HD45 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 CNN2P10-201ENST00000443067 918 ntBASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 AC004898.1-201ENST00000451057 766 ntBASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 AC067930.6-201ENST00000623257 4947 ntBASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF3Q9HD45 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AKR7A2P1-201ENST00000460134 915 ntBASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms