Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 AL139094.1-201ENST00000405549 1188 ntBASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 AC234783.1-201ENST00000441761 496 ntBASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 AC012508.2-201ENST00000567613 1472 ntBASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTCHD1Q96NR3 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 AL359258.3-201ENST00000622910 2331 ntBASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 OR8S1-201ENST00000310194 1080 ntBASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 CROCCP4-201ENST00000457096 498 ntBASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 AC106760.1-201ENST00000508690 800 ntBASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 HILS1-202ENST00000545329 423 ntBASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 REXO1L5P-201ENST00000622260 2098 ntBASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PTCHD1Q96NR3 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTCHD1Q96NR3 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTCHD1Q96NR3 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTCHD1Q96NR3 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTCHD1Q96NR3 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PTCHD1Q96NR3 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.33□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms