Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
MSH6P52701 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
MSH6P52701 KRT18P36-201ENST00000411618 1276 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC20.6■□□□□ 0.89
MSH6P52701 DPY19L2P5-201ENST00000456300 331 ntBASIC20.6■□□□□ 0.89
MSH6P52701 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC20.6■□□□□ 0.89
MSH6P52701 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC20.6■□□□□ 0.89
MSH6P52701 AP000322.3-201ENST00000608665 388 ntBASIC20.6■□□□□ 0.89
MSH6P52701 AC011471.3-201ENST00000623576 402 ntBASIC20.6■□□□□ 0.89
MSH6P52701 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC20.6■□□□□ 0.89
MSH6P52701 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH6P52701 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 MRPL37P1-201ENST00000592451 1337 ntBASIC20.6■□□□□ 0.89
MSH6P52701 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
MSH6P52701 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH6P52701 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC20.6■□□□□ 0.89
MSH6P52701 CYP2T1P-202ENST00000641596 2535 ntBASIC20.6■□□□□ 0.89
MSH6P52701 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A21P-201ENST00000510875 1396 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A15P-201ENST00000514465 1395 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A6P-201ENST00000515148 1394 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A16P-201ENST00000526662 1395 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A9P-201ENST00000527940 1395 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A5P-201ENST00000528738 1395 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A14P-201ENST00000530386 1395 ntBASIC20.6■□□□□ 0.89
MSH6P52701 FAM90A13P-201ENST00000534703 1395 ntBASIC20.6■□□□□ 0.89
MSH6P52701 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
MSH6P52701 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC20.6■□□□□ 0.89
MSH6P52701 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 HLA-DQB1-202ENST00000399079 1501 ntBASIC20.6■□□□□ 0.89
MSH6P52701 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.6■□□□□ 0.89
MSH6P52701 PES1-204ENST00000402284 2144 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH6P52701 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH6P52701 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC20.6■□□□□ 0.89
MSH6P52701 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
MSH6P52701 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC20.59■□□□□ 0.89
MSH6P52701 FAM86B3P-203ENST00000523992 854 ntBASIC20.59■□□□□ 0.89
MSH6P52701 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC20.59■□□□□ 0.89
MSH6P52701 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 AC027139.1-201ENST00000565286 951 ntBASIC20.59■□□□□ 0.89
MSH6P52701 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH6P52701 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
MSH6P52701 PEBP1P2-201ENST00000603980 558 ntBASIC20.59■□□□□ 0.89
MSH6P52701 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
MSH6P52701 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
MSH6P52701 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.59■□□□□ 0.89
MSH6P52701 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
MSH6P52701 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
MSH6P52701 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 AL357373.1-201ENST00000394974 322 ntBASIC20.59■□□□□ 0.89
MSH6P52701 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 AQP7P5-201ENST00000428759 1049 ntBASIC20.59■□□□□ 0.89
MSH6P52701 AQP7P4-201ENST00000447083 1042 ntBASIC20.59■□□□□ 0.89
MSH6P52701 AQP7P2-201ENST00000453967 1041 ntBASIC20.59■□□□□ 0.89
MSH6P52701 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH6P52701 AC055811.3-201ENST00000584952 686 ntBASIC20.59■□□□□ 0.89
MSH6P52701 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH6P52701 AQP7P3-201ENST00000624547 1041 ntBASIC20.59■□□□□ 0.89
MSH6P52701 MME-218ENST00000625667 363 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH6P52701 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH6P52701 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC20.58■□□□□ 0.89
MSH6P52701 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC20.58■□□□□ 0.89
MSH6P52701 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms