Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 GRAMD4P3-201ENST00000621665 1669 ntBASIC11.65□□□□□ -0.54
HLA-DMBP28068 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AC097493.3-201ENST00000509725 367 ntBASIC11.65□□□□□ -0.54
HLA-DMBP28068 NAA60-208ENST00000570819 833 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 MIR4745-201ENST00000577608 62 ntBASIC11.65□□□□□ -0.54
HLA-DMBP28068 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 GPER1-207ENST00000619052 571 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AJ011932.1-201ENST00000621707 465 ntBASIC11.65□□□□□ -0.54
HLA-DMBP28068 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC11.65□□□□□ -0.54
HLA-DMBP28068 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 ABR-228ENST00000574437 3196 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
HLA-DMBP28068 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DMBP28068 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DMBP28068 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DMBP28068 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.65□□□□□ -0.55
HLA-DMBP28068 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DMBP28068 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
HLA-DMBP28068 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DMBP28068 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DMBP28068 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 POLL-206ENST00000370172 2308 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 AL133267.1-201ENST00000398220 340 ntBASIC11.64□□□□□ -0.55
HLA-DMBP28068 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 CENPM-206ENST00000407253 818 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 RN7SL618P-201ENST00000477850 296 ntBASIC11.64□□□□□ -0.55
HLA-DMBP28068 AC027369.6-201ENST00000525520 931 ntBASIC11.64□□□□□ -0.55
HLA-DMBP28068 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 GREM1-201ENST00000560677 623 ntTSL 4 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 AC010336.2-201ENST00000564226 506 ntBASIC11.64□□□□□ -0.55
HLA-DMBP28068 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 COQ4-205ENST00000609948 956 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 AC073592.8-201ENST00000624126 511 ntBASIC11.64□□□□□ -0.55
HLA-DMBP28068 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DMBP28068 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DMBP28068 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms