Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
COL3A1P02461 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 OR2R1P-201ENST00000441404 914 ntBASIC19.65■□□□□ 0.74
COL3A1P02461 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
COL3A1P02461 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.65■□□□□ 0.74
COL3A1P02461 EID1-202ENST00000560490 584 ntTSL 3 BASIC19.65■□□□□ 0.74
COL3A1P02461 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.65■□□□□ 0.74
COL3A1P02461 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC19.65■□□□□ 0.74
COL3A1P02461 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC19.65■□□□□ 0.74
COL3A1P02461 AC027601.3-201ENST00000622907 509 ntBASIC19.65■□□□□ 0.74
COL3A1P02461 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC19.65■□□□□ 0.74
COL3A1P02461 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 AC006504.5-208ENST00000588784 2401 ntBASIC19.65■□□□□ 0.74
COL3A1P02461 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.65■□□□□ 0.74
COL3A1P02461 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.65■□□□□ 0.74
COL3A1P02461 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COL3A1P02461 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL3A1P02461 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
COL3A1P02461 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL3A1P02461 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL3A1P02461 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.64■□□□□ 0.74
COL3A1P02461 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC19.64■□□□□ 0.74
COL3A1P02461 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC19.64■□□□□ 0.74
COL3A1P02461 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL3A1P02461 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL3A1P02461 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.74
COL3A1P02461 USP35-204ENST00000530267 2419 ntTSL 2 BASIC19.64■□□□□ 0.74
COL3A1P02461 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL3A1P02461 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL3A1P02461 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL3A1P02461 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL3A1P02461 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL3A1P02461 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.64■□□□□ 0.73
COL3A1P02461 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC19.64■□□□□ 0.73
COL3A1P02461 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC19.64■□□□□ 0.73
COL3A1P02461 MEG3_2.1-201ENST00000611456 105 ntBASIC19.64■□□□□ 0.73
COL3A1P02461 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL3A1P02461 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL3A1P02461 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL3A1P02461 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC19.64■□□□□ 0.73
COL3A1P02461 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
COL3A1P02461 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.64■□□□□ 0.73
COL3A1P02461 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC19.64■□□□□ 0.73
COL3A1P02461 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL3A1P02461 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL3A1P02461 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC19.63■□□□□ 0.73
COL3A1P02461 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
COL3A1P02461 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 FAM58BP-201ENST00000439056 645 ntBASIC19.63■□□□□ 0.73
COL3A1P02461 AL596276.2-201ENST00000447525 331 ntBASIC19.63■□□□□ 0.73
COL3A1P02461 SPTLC1P5-201ENST00000450718 252 ntBASIC19.63■□□□□ 0.73
COL3A1P02461 AC106794.1-201ENST00000506935 792 ntBASIC19.63■□□□□ 0.73
COL3A1P02461 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC19.63■□□□□ 0.73
COL3A1P02461 SNORD3B-2-202ENST00000571722 791 ntBASIC19.63■□□□□ 0.73
COL3A1P02461 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.63■□□□□ 0.73
COL3A1P02461 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.63■□□□□ 0.73
COL3A1P02461 AL132994.2-201ENST00000603120 687 ntBASIC19.63■□□□□ 0.73
COL3A1P02461 AL157813.1-201ENST00000612996 587 ntBASIC19.63■□□□□ 0.73
COL3A1P02461 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.63■□□□□ 0.73
COL3A1P02461 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC19.63■□□□□ 0.73
COL3A1P02461 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.63■□□□□ 0.73
COL3A1P02461 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC19.63■□□□□ 0.73
COL3A1P02461 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
COL3A1P02461 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL3A1P02461 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL3A1P02461 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL3A1P02461 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.62■□□□□ 0.73
COL3A1P02461 AC078875.1-201ENST00000431907 724 ntBASIC19.62■□□□□ 0.73
COL3A1P02461 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.62■□□□□ 0.73
COL3A1P02461 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC19.62■□□□□ 0.73
COL3A1P02461 AKR7A2P1-201ENST00000460134 915 ntBASIC19.62■□□□□ 0.73
COL3A1P02461 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.62■□□□□ 0.73
COL3A1P02461 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
COL3A1P02461 AC022447.6-201ENST00000515522 438 ntBASIC19.62■□□□□ 0.73
COL3A1P02461 SCARNA21-201ENST00000517026 139 ntBASIC19.62■□□□□ 0.73
COL3A1P02461 IGHVIII-5-2-201ENST00000522505 261 ntBASIC19.62■□□□□ 0.73
COL3A1P02461 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.62■□□□□ 0.73
COL3A1P02461 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC19.62■□□□□ 0.73
COL3A1P02461 SYT17-208ENST00000568433 812 ntTSL 3 BASIC19.62■□□□□ 0.73
COL3A1P02461 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.62■□□□□ 0.73
COL3A1P02461 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC19.62■□□□□ 0.73
COL3A1P02461 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.62■□□□□ 0.73
COL3A1P02461 AC004923.1-202ENST00000642106 209 ntBASIC19.62■□□□□ 0.73
COL3A1P02461 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms