Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC10.57□□□□□ -0.72
PRKDCP78527 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC10.57□□□□□ -0.72
PRKDCP78527 ZNF877P-201ENST00000437614 612 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 RN7SL564P-201ENST00000496309 250 ntBASIC10.57□□□□□ -0.72
PRKDCP78527 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
PRKDCP78527 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
PRKDCP78527 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC10.57□□□□□ -0.72
PRKDCP78527 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
PRKDCP78527 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 ERP29P1-201ENST00000442902 706 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC10.56□□□□□ -0.72
PRKDCP78527 AC008494.1-201ENST00000497612 796 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 MIR4640-201ENST00000581824 90 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC10.56□□□□□ -0.72
PRKDCP78527 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 AC092127.1-201ENST00000567093 3455 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC10.56□□□□□ -0.72
PRKDCP78527 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
PRKDCP78527 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 HNRNPA1P5-201ENST00000558213 966 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 AC067931.2-201ENST00000623655 2003 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC10.56□□□□□ -0.72
PRKDCP78527 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 RN7SL277P-201ENST00000481521 288 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 RN7SL523P-201ENST00000484401 298 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 AC087203.1-201ENST00000532111 1181 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC10.56□□□□□ -0.72
PRKDCP78527 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC10.56□□□□□ -0.72
PRKDCP78527 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
PRKDCP78527 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 OR52M2P-201ENST00000414298 959 ntBASIC10.56□□□□□ -0.72
PRKDCP78527 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
PRKDCP78527 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC10.56□□□□□ -0.72
PRKDCP78527 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 AC019109.1-201ENST00000401725 1874 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 RN7SL69P-201ENST00000468423 272 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 RN7SL340P-201ENST00000470792 296 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 AC025186.1-201ENST00000478174 870 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC10.55□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms