Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
MSH6P52701 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MSH6P52701 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC20.63■□□□□ 0.89
MSH6P52701 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
MSH6P52701 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
MSH6P52701 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
MSH6P52701 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
MSH6P52701 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC20.63■□□□□ 0.89
MSH6P52701 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH6P52701 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
MSH6P52701 RPS23-204ENST00000507980 836 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH6P52701 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC20.63■□□□□ 0.89
MSH6P52701 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
MSH6P52701 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.63■□□□□ 0.89
MSH6P52701 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
MSH6P52701 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
MSH6P52701 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH6P52701 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC20.63■□□□□ 0.89
MSH6P52701 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH6P52701 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH6P52701 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 AC093909.3-201ENST00000504783 336 ntBASIC20.62■□□□□ 0.89
MSH6P52701 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC20.62■□□□□ 0.89
MSH6P52701 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH6P52701 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC20.62■□□□□ 0.89
MSH6P52701 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC20.62■□□□□ 0.89
MSH6P52701 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH6P52701 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC20.62■□□□□ 0.89
MSH6P52701 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC20.62■□□□□ 0.89
MSH6P52701 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC20.62■□□□□ 0.89
MSH6P52701 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MSH6P52701 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH6P52701 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
MSH6P52701 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH6P52701 AC090340.1-201ENST00000620778 4980 ntBASIC20.62■□□□□ 0.89
MSH6P52701 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC20.62■□□□□ 0.89
MSH6P52701 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.62■□□□□ 0.89
MSH6P52701 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MSH6P52701 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC20.61■□□□□ 0.89
MSH6P52701 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC20.61■□□□□ 0.89
MSH6P52701 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
MSH6P52701 NEU3-207ENST00000534628 746 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC20.61■□□□□ 0.89
MSH6P52701 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC20.61■□□□□ 0.89
MSH6P52701 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC20.61■□□□□ 0.89
MSH6P52701 AC027601.3-201ENST00000622907 509 ntBASIC20.61■□□□□ 0.89
MSH6P52701 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
MSH6P52701 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 MARK2P16-201ENST00000605714 1723 ntBASIC20.61■□□□□ 0.89
MSH6P52701 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.61■□□□□ 0.89
MSH6P52701 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.61■□□□□ 0.89
MSH6P52701 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.61■□□□□ 0.89
MSH6P52701 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH6P52701 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH6P52701 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms