Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SHOX2O60902 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
SHOX2O60902 AC126755.1-201ENST00000525846 6405 ntBASIC15.23■□□□□ 0.03
SHOX2O60902 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC15.23■□□□□ 0.03
SHOX2O60902 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC15.23■□□□□ 0.03
SHOX2O60902 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
SHOX2O60902 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.23■□□□□ 0.03
SHOX2O60902 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.23■□□□□ 0.03
SHOX2O60902 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.23■□□□□ 0.03
SHOX2O60902 OR7E14P-202ENST00000530490 1290 ntBASIC15.23■□□□□ 0.03
SHOX2O60902 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.23■□□□□ 0.03
SHOX2O60902 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.23■□□□□ 0.03
SHOX2O60902 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SHOX2O60902 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.23■□□□□ 0.03
SHOX2O60902 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.23■□□□□ 0.03
SHOX2O60902 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SHOX2O60902 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.23■□□□□ 0.03
SHOX2O60902 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.23■□□□□ 0.03
SHOX2O60902 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SHOX2O60902 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
SHOX2O60902 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 NCLP1-201ENST00000445357 1963 ntBASIC15.22■□□□□ 0.03
SHOX2O60902 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.22■□□□□ 0.03
SHOX2O60902 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SHOX2O60902 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.22■□□□□ 0.03
SHOX2O60902 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.22■□□□□ 0.03
SHOX2O60902 CLEC4GP1-201ENST00000596555 870 ntBASIC15.22■□□□□ 0.03
SHOX2O60902 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 FOXO1B-201ENST00000504678 1527 ntBASIC15.22■□□□□ 0.03
SHOX2O60902 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
SHOX2O60902 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.22■□□□□ 0.03
SHOX2O60902 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHOX2O60902 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms