Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.75■□□□□ 0.59
CACNA1FO60840 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 AC006504.5-208ENST00000588784 2401 ntBASIC18.74■□□□□ 0.59
CACNA1FO60840 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.74■□□□□ 0.59
CACNA1FO60840 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.74■□□□□ 0.59
CACNA1FO60840 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18.74■□□□□ 0.59
CACNA1FO60840 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC18.74■□□□□ 0.59
CACNA1FO60840 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 AC026740.1-201ENST00000607068 791 ntBASIC18.74■□□□□ 0.59
CACNA1FO60840 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CACNA1FO60840 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CACNA1FO60840 MBLAC2-202ENST00000514906 1936 ntBASIC18.74■□□□□ 0.59
CACNA1FO60840 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC18.74■□□□□ 0.59
CACNA1FO60840 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CACNA1FO60840 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.74■□□□□ 0.59
CACNA1FO60840 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC18.73■□□□□ 0.59
CACNA1FO60840 SCARNA20.5-201ENST00000516991 142 ntBASIC18.73■□□□□ 0.59
CACNA1FO60840 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 AC007663.3-201ENST00000609632 465 ntBASIC18.73■□□□□ 0.59
CACNA1FO60840 AL136295.7-201ENST00000619226 1200 ntBASIC18.73■□□□□ 0.59
CACNA1FO60840 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CACNA1FO60840 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.73■□□□□ 0.59
CACNA1FO60840 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CACNA1FO60840 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 TMBIM7P-202ENST00000641474 1516 ntBASIC18.73■□□□□ 0.59
CACNA1FO60840 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 GPAA1P2-201ENST00000417923 928 ntBASIC18.73■□□□□ 0.59
CACNA1FO60840 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.73■□□□□ 0.59
CACNA1FO60840 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC18.73■□□□□ 0.59
CACNA1FO60840 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 AC015688.4-201ENST00000580780 1647 ntBASIC18.73■□□□□ 0.59
CACNA1FO60840 AC090505.1-201ENST00000430515 1834 ntBASIC18.73■□□□□ 0.59
CACNA1FO60840 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CACNA1FO60840 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
CACNA1FO60840 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC18.72■□□□□ 0.59
CACNA1FO60840 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.72■□□□□ 0.59
CACNA1FO60840 KRT8P21-201ENST00000430398 1491 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 KLF2P1-201ENST00000447438 1042 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AC126915.1-201ENST00000522847 1038 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC18.72■□□□□ 0.59
CACNA1FO60840 NDUFV2P1-201ENST00000596415 907 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 AL645939.5-201ENST00000606834 243 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AC009093.10-201ENST00000641956 1442 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC18.72■□□□□ 0.59
CACNA1FO60840 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AC103702.1-201ENST00000548801 2630 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CACNA1FO60840 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CACNA1FO60840 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CACNA1FO60840 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms