Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 FAM86MP-201ENST00000340703 885 ntBASIC21.13■□□□□ 0.97
USP47Q96K76 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC21.13■□□□□ 0.97
USP47Q96K76 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC21.13■□□□□ 0.97
USP47Q96K76 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC21.13■□□□□ 0.97
USP47Q96K76 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC21.13■□□□□ 0.97
USP47Q96K76 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC21.13■□□□□ 0.97
USP47Q96K76 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC21.13■□□□□ 0.97
USP47Q96K76 RN7SL713P-201ENST00000582127 302 ntBASIC21.13■□□□□ 0.97
USP47Q96K76 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC21.13■□□□□ 0.97
USP47Q96K76 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
USP47Q96K76 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 LINC01101-201ENST00000622953 1884 ntBASIC21.13■□□□□ 0.97
USP47Q96K76 AC020910.5-201ENST00000623668 1865 ntBASIC21.13■□□□□ 0.97
USP47Q96K76 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC21.13■□□□□ 0.97
USP47Q96K76 CICP24-201ENST00000605464 2705 ntBASIC21.13■□□□□ 0.97
USP47Q96K76 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC21.13■□□□□ 0.97
USP47Q96K76 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
USP47Q96K76 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC21.13■□□□□ 0.97
USP47Q96K76 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 API5-203ENST00000455725 2257 ntTSL 2 BASIC21.13■□□□□ 0.97
USP47Q96K76 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
USP47Q96K76 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 RPF1-202ENST00000370656 724 ntTSL 2 BASIC21.12■□□□□ 0.97
USP47Q96K76 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC21.12■□□□□ 0.97
USP47Q96K76 TLE1P1-201ENST00000422965 589 ntBASIC21.12■□□□□ 0.97
USP47Q96K76 AC007969.1-201ENST00000433675 447 ntBASIC21.12■□□□□ 0.97
USP47Q96K76 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC21.12■□□□□ 0.97
USP47Q96K76 AC009542.2-202ENST00000619004 1067 ntBASIC21.12■□□□□ 0.97
USP47Q96K76 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
USP47Q96K76 ANKRD30BP2-201ENST00000435744 1610 ntBASIC21.12■□□□□ 0.97
USP47Q96K76 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC21.12■□□□□ 0.97
USP47Q96K76 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 MYB-201ENST00000316528 3571 ntTSL 5 BASIC21.12■□□□□ 0.97
USP47Q96K76 MYB-241ENST00000616088 3573 ntTSL 5 BASIC21.12■□□□□ 0.97
USP47Q96K76 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC21.12■□□□□ 0.97
USP47Q96K76 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC21.12■□□□□ 0.97
USP47Q96K76 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
USP47Q96K76 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC21.12■□□□□ 0.97
USP47Q96K76 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP47Q96K76 AC013726.1-201ENST00000563747 2285 ntBASIC21.11■□□□□ 0.97
USP47Q96K76 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
USP47Q96K76 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
USP47Q96K76 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC21.11■□□□□ 0.97
USP47Q96K76 PACS1-203ENST00000524815 628 ntTSL 4 BASIC21.11■□□□□ 0.97
USP47Q96K76 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 AP006547.1-201ENST00000563435 692 ntBASIC21.11■□□□□ 0.97
USP47Q96K76 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC21.11■□□□□ 0.97
USP47Q96K76 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 FKBP4P6-201ENST00000457486 1332 ntBASIC21.11■□□□□ 0.97
USP47Q96K76 STK24-203ENST00000397517 4578 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC21.11■□□□□ 0.97
USP47Q96K76 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC21.11■□□□□ 0.97
USP47Q96K76 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC21.11■□□□□ 0.97
USP47Q96K76 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC21.11■□□□□ 0.97
USP47Q96K76 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP47Q96K76 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 RGS5-214ENST00000429865 754 ntTSL 3 BASIC21.1■□□□□ 0.97
USP47Q96K76 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC21.1■□□□□ 0.97
USP47Q96K76 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP47Q96K76 COX5BP1-201ENST00000507622 393 ntBASIC21.1■□□□□ 0.97
USP47Q96K76 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC21.1■□□□□ 0.97
USP47Q96K76 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC21.1■□□□□ 0.97
USP47Q96K76 AC131206.1-201ENST00000538078 1211 ntBASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms