Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 AC114812.1-204ENST00000449669 728 ntBASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 CLUHP6-201ENST00000580789 941 ntBASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 AC010319.3-201ENST00000597028 470 ntBASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 AP005019.2-201ENST00000615104 511 ntBASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 AC005252.2-201ENST00000624630 1141 ntBASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.12□□□□□ -0.15
NUP54Q7Z3B4 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC005034.1-201ENST00000426657 489 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC093433.1-201ENST00000458048 571 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 PTP4A1P2-201ENST00000546033 454 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC132938.2-201ENST00000579188 680 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC015936.2-201ENST00000593177 259 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 LINC01101-201ENST00000622953 1884 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AL591163.1-201ENST00000641757 987 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 PRSS30P-206ENST00000641773 873 ntBASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NUP54Q7Z3B4 AC012508.2-201ENST00000567613 1472 ntBASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms