Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
HOXC4P09017 DUX4L46-201ENST00000566845 751 ntBASIC14.72□□□□□ -0.05
HOXC4P09017 AC009955.4-201ENST00000597192 544 ntBASIC14.72□□□□□ -0.05
HOXC4P09017 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXC4P09017 AC244452.3-201ENST00000636814 210 ntBASIC14.72□□□□□ -0.05
HOXC4P09017 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 SALL4P5-201ENST00000419001 1760 ntBASIC14.72□□□□□ -0.05
HOXC4P09017 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 KRT8P29-201ENST00000420409 1371 ntBASIC14.72□□□□□ -0.05
HOXC4P09017 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 AL133338.1-201ENST00000565695 1517 ntBASIC14.71□□□□□ -0.05
HOXC4P09017 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
HOXC4P09017 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 AC009093.2-202ENST00000620513 2079 ntBASIC14.71□□□□□ -0.05
HOXC4P09017 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXC4P09017 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.71□□□□□ -0.05
HOXC4P09017 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.71□□□□□ -0.05
HOXC4P09017 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
HOXC4P09017 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.71□□□□□ -0.05
HOXC4P09017 AL162426.1-201ENST00000624141 743 ntBASIC14.71□□□□□ -0.05
HOXC4P09017 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
HOXC4P09017 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HOXC4P09017 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 AC020910.5-201ENST00000623668 1865 ntBASIC14.71□□□□□ -0.05
HOXC4P09017 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXC4P09017 AC138035.3-201ENST00000622706 2791 ntBASIC14.71□□□□□ -0.06
HOXC4P09017 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
HOXC4P09017 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
HOXC4P09017 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HOXC4P09017 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.71□□□□□ -0.06
HOXC4P09017 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HOXC4P09017 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
HOXC4P09017 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
HOXC4P09017 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 AC138028.6-201ENST00000616106 1482 ntBASIC14.7□□□□□ -0.06
HOXC4P09017 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
HOXC4P09017 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
HOXC4P09017 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
HOXC4P09017 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.7□□□□□ -0.06
HOXC4P09017 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HOXC4P09017 AKR7A2P1-201ENST00000460134 915 ntBASIC14.7□□□□□ -0.06
HOXC4P09017 SERPINA13P-202ENST00000478994 924 ntBASIC14.7□□□□□ -0.06
HOXC4P09017 AC099548.2-209ENST00000480264 625 ntBASIC14.7□□□□□ -0.06
HOXC4P09017 GCOM2-201ENST00000509133 1104 ntBASIC14.7□□□□□ -0.06
HOXC4P09017 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.7□□□□□ -0.06
HOXC4P09017 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC14.7□□□□□ -0.06
HOXC4P09017 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms