Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
VPS4BO75351 AC009477.1-201ENST00000452936 217 ntBASIC15.01□□□□□ -0.01
VPS4BO75351 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS4BO75351 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS4BO75351 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.01□□□□□ -0.01
VPS4BO75351 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.01□□□□□ -0.01
VPS4BO75351 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.01□□□□□ -0.01
VPS4BO75351 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VPS4BO75351 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VPS4BO75351 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.01□□□□□ -0.01
VPS4BO75351 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15□□□□□ -0.01
VPS4BO75351 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15□□□□□ -0.01
VPS4BO75351 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
VPS4BO75351 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15□□□□□ -0.01
VPS4BO75351 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15□□□□□ -0.01
VPS4BO75351 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 DFFBP1-201ENST00000433250 979 ntBASIC15□□□□□ -0.01
VPS4BO75351 TARDBPP1-201ENST00000442013 1203 ntBASIC15□□□□□ -0.01
VPS4BO75351 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 KRT17P8-201ENST00000540749 863 ntBASIC15□□□□□ -0.01
VPS4BO75351 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
VPS4BO75351 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
VPS4BO75351 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15□□□□□ -0.01
VPS4BO75351 IGHV3-72-202ENST00000621503 303 ntBASIC15□□□□□ -0.01
VPS4BO75351 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 AC012508.2-201ENST00000567613 1472 ntBASIC15□□□□□ -0.01
VPS4BO75351 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
VPS4BO75351 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
VPS4BO75351 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
VPS4BO75351 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 KRT8P12-202ENST00000472924 1397 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
VPS4BO75351 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS4BO75351 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.99□□□□□ -0.01
VPS4BO75351 DGCR5-201ENST00000399539 862 ntBASIC14.99□□□□□ -0.01
VPS4BO75351 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS4BO75351 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS4BO75351 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms