Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 AC007952.4-201ENST00000573866 637 ntBASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.11■□□□□ 0.65
SHANK3Q9BYB0 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 API5-203ENST00000455725 2257 ntTSL 2 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 SSR4P1-203ENST00000599569 2260 ntBASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 AC004837.1-201ENST00000446267 564 ntBASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 CR383656.3-201ENST00000551315 183 ntBASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 DNM1P51-201ENST00000558149 522 ntBASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 AC087392.5-201ENST00000612517 489 ntBASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 AC009560.1-201ENST00000620208 434 ntBASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHANK3Q9BYB0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 TMBIM7P-203ENST00000641617 1718 ntBASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 LINC00634-202ENST00000505157 222 ntBASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 AP003680.1-201ENST00000598970 3660 ntBASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHANK3Q9BYB0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 ALG1L13P-202ENST00000519320 584 ntBASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 MIR3180-2-201ENST00000581748 88 ntBASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 LINC01101-201ENST00000622953 1884 ntBASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHANK3Q9BYB0 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms