Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
RIPK4P57078 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.9■□□□□ 0.78
RIPK4P57078 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC19.9■□□□□ 0.78
RIPK4P57078 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
RIPK4P57078 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 ZBED1P1-201ENST00000502364 1930 ntBASIC19.9■□□□□ 0.78
RIPK4P57078 ACE3P-201ENST00000423435 1973 ntBASIC19.9■□□□□ 0.78
RIPK4P57078 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
RIPK4P57078 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.9■□□□□ 0.78
RIPK4P57078 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RIPK4P57078 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC19.9■□□□□ 0.78
RIPK4P57078 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
RIPK4P57078 MYB-201ENST00000316528 3571 ntTSL 5 BASIC19.89■□□□□ 0.78
RIPK4P57078 MYB-241ENST00000616088 3573 ntTSL 5 BASIC19.89■□□□□ 0.78
RIPK4P57078 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
RIPK4P57078 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC19.89■□□□□ 0.77
RIPK4P57078 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
RIPK4P57078 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.89■□□□□ 0.77
RIPK4P57078 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RIPK4P57078 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
RIPK4P57078 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RIPK4P57078 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
RIPK4P57078 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
RIPK4P57078 HLA-V-201ENST00000429037 534 ntBASIC19.89■□□□□ 0.77
RIPK4P57078 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.89■□□□□ 0.77
RIPK4P57078 AC245100.3-201ENST00000441281 285 ntBASIC19.89■□□□□ 0.77
RIPK4P57078 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.89■□□□□ 0.77
RIPK4P57078 BNIP3P42-201ENST00000454982 569 ntBASIC19.89■□□□□ 0.77
RIPK4P57078 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RIPK4P57078 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RIPK4P57078 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC19.89■□□□□ 0.77
RIPK4P57078 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RIPK4P57078 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.89■□□□□ 0.77
RIPK4P57078 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RIPK4P57078 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.89■□□□□ 0.77
RIPK4P57078 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
RIPK4P57078 BNIP3P29-201ENST00000598302 571 ntBASIC19.89■□□□□ 0.77
RIPK4P57078 AC011447.5-201ENST00000616168 564 ntBASIC19.89■□□□□ 0.77
RIPK4P57078 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RIPK4P57078 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
RIPK4P57078 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 LINC00528-201ENST00000600723 2160 ntBASIC19.88■□□□□ 0.77
RIPK4P57078 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
RIPK4P57078 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
RIPK4P57078 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.88■□□□□ 0.77
RIPK4P57078 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.88■□□□□ 0.77
RIPK4P57078 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC19.88■□□□□ 0.77
RIPK4P57078 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 AC244107.1-201ENST00000442033 332 ntBASIC19.88■□□□□ 0.77
RIPK4P57078 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.88■□□□□ 0.77
RIPK4P57078 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.88■□□□□ 0.77
RIPK4P57078 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.88■□□□□ 0.77
RIPK4P57078 AC006453.4-201ENST00000636949 1252 ntBASIC19.88■□□□□ 0.77
RIPK4P57078 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RIPK4P57078 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
RIPK4P57078 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.88■□□□□ 0.77
RIPK4P57078 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
RIPK4P57078 GSN-215ENST00000545652 2428 ntTSL 2 BASIC19.87■□□□□ 0.77
RIPK4P57078 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RIPK4P57078 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
RIPK4P57078 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RIPK4P57078 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
RIPK4P57078 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
RIPK4P57078 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RIPK4P57078 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RIPK4P57078 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RIPK4P57078 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RIPK4P57078 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms