Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC103691.2-201ENST00000618824 433 ntBASIC15.02■□□□□ -0
LIMK1P53667 AL805961.1-203ENST00000641078 1258 ntBASIC15.02■□□□□ -0
LIMK1P53667 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
LIMK1P53667 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
LIMK1P53667 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
LIMK1P53667 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LIMK1P53667 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.02□□□□□ -0.01
LIMK1P53667 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.01□□□□□ -0.01
LIMK1P53667 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LIMK1P53667 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LIMK1P53667 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 AC234644.1-201ENST00000406065 370 ntBASIC15.01□□□□□ -0.01
LIMK1P53667 RPSAP31-201ENST00000416648 895 ntBASIC15.01□□□□□ -0.01
LIMK1P53667 RN7SL181P-201ENST00000462921 277 ntBASIC15.01□□□□□ -0.01
LIMK1P53667 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.01□□□□□ -0.01
LIMK1P53667 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.01□□□□□ -0.01
LIMK1P53667 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC15.01□□□□□ -0.01
LIMK1P53667 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC15.01□□□□□ -0.01
LIMK1P53667 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 MIR6756-201ENST00000616240 63 ntBASIC15.01□□□□□ -0.01
LIMK1P53667 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LIMK1P53667 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LIMK1P53667 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIMK1P53667 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
LIMK1P53667 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15□□□□□ -0.01
LIMK1P53667 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15□□□□□ -0.01
LIMK1P53667 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15□□□□□ -0.01
LIMK1P53667 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15□□□□□ -0.01
LIMK1P53667 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LIMK1P53667 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
LIMK1P53667 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15□□□□□ -0.01
LIMK1P53667 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15□□□□□ -0.01
LIMK1P53667 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15□□□□□ -0.01
LIMK1P53667 RN7SL8P-201ENST00000461771 266 ntBASIC15□□□□□ -0.01
LIMK1P53667 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15□□□□□ -0.01
LIMK1P53667 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
LIMK1P53667 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15□□□□□ -0.01
LIMK1P53667 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15□□□□□ -0.01
LIMK1P53667 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
LIMK1P53667 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15□□□□□ -0.01
LIMK1P53667 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15□□□□□ -0.01
LIMK1P53667 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC15□□□□□ -0.01
LIMK1P53667 AC006453.1-201ENST00000636037 1257 ntBASIC15□□□□□ -0.01
LIMK1P53667 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15□□□□□ -0.01
LIMK1P53667 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
LIMK1P53667 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIMK1P53667 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIMK1P53667 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LIMK1P53667 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LIMK1P53667 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms