Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSH3P20585 LINC01101-201ENST00000622953 1884 ntBASIC15.23■□□□□ 0.03
MSH3P20585 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.22■□□□□ 0.03
MSH3P20585 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.22■□□□□ 0.03
MSH3P20585 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.22■□□□□ 0.03
MSH3P20585 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 BX539320.1-201ENST00000623759 877 ntBASIC15.22■□□□□ 0.03
MSH3P20585 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
MSH3P20585 AC105233.6-201ENST00000642093 218 ntBASIC15.22■□□□□ 0.03
MSH3P20585 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MSH3P20585 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.22■□□□□ 0.03
MSH3P20585 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.22■□□□□ 0.03
MSH3P20585 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSH3P20585 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
MSH3P20585 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
MSH3P20585 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.21■□□□□ 0.03
MSH3P20585 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
MSH3P20585 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.21■□□□□ 0.03
MSH3P20585 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.21■□□□□ 0.03
MSH3P20585 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.21■□□□□ 0.03
MSH3P20585 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.21■□□□□ 0.03
MSH3P20585 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.21■□□□□ 0.03
MSH3P20585 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.21■□□□□ 0.03
MSH3P20585 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.21■□□□□ 0.03
MSH3P20585 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.21■□□□□ 0.03
MSH3P20585 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.21■□□□□ 0.03
MSH3P20585 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.21■□□□□ 0.03
MSH3P20585 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.21■□□□□ 0.03
MSH3P20585 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSH3P20585 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms