Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
FOXA1P55317 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.79□□□□□ -0.04
FOXA1P55317 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 GRK6P1-201ENST00000400595 1711 ntBASIC14.79□□□□□ -0.04
FOXA1P55317 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
FOXA1P55317 AC009407.1-201ENST00000568958 598 ntBASIC14.79□□□□□ -0.04
FOXA1P55317 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 AL158211.3-201ENST00000607385 239 ntBASIC14.79□□□□□ -0.04
FOXA1P55317 AL161772.1-201ENST00000610494 4412 ntBASIC14.79□□□□□ -0.04
FOXA1P55317 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA1P55317 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
FOXA1P55317 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.79□□□□□ -0.04
FOXA1P55317 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
FOXA1P55317 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
FOXA1P55317 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
FOXA1P55317 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
FOXA1P55317 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
FOXA1P55317 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 AC041040.2-201ENST00000622926 2899 ntBASIC14.78□□□□□ -0.04
FOXA1P55317 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.78□□□□□ -0.04
FOXA1P55317 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.78□□□□□ -0.04
FOXA1P55317 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 AC009477.1-201ENST00000452936 217 ntBASIC14.78□□□□□ -0.04
FOXA1P55317 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 TIMM17BP1-201ENST00000545713 516 ntBASIC14.78□□□□□ -0.04
FOXA1P55317 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.78□□□□□ -0.04
FOXA1P55317 AL691403.2-201ENST00000618460 490 ntBASIC14.78□□□□□ -0.04
FOXA1P55317 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
FOXA1P55317 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
FOXA1P55317 CICP4-201ENST00000447359 2812 ntBASIC14.78□□□□□ -0.04
FOXA1P55317 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
FOXA1P55317 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
FOXA1P55317 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
FOXA1P55317 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.78□□□□□ -0.04
FOXA1P55317 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.77□□□□□ -0.04
FOXA1P55317 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
FOXA1P55317 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.77□□□□□ -0.04
FOXA1P55317 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms