Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.09■□□□□ 0.33
MSH4O15457 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
MSH4O15457 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.09■□□□□ 0.33
MSH4O15457 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.09■□□□□ 0.33
MSH4O15457 FO681548.1-201ENST00000455617 1132 ntBASIC17.09■□□□□ 0.33
MSH4O15457 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.09■□□□□ 0.33
MSH4O15457 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.09■□□□□ 0.33
MSH4O15457 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.09■□□□□ 0.33
MSH4O15457 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 LINC00528-201ENST00000600723 2160 ntBASIC17.09■□□□□ 0.33
MSH4O15457 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.09■□□□□ 0.33
MSH4O15457 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.09■□□□□ 0.33
MSH4O15457 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
MSH4O15457 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.08■□□□□ 0.33
MSH4O15457 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
MSH4O15457 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.08■□□□□ 0.33
MSH4O15457 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.08■□□□□ 0.33
MSH4O15457 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH4O15457 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
MSH4O15457 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
MSH4O15457 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.08■□□□□ 0.32
MSH4O15457 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
MSH4O15457 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 TPM3P8-201ENST00000330554 643 ntBASIC17.08■□□□□ 0.32
MSH4O15457 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.08■□□□□ 0.32
MSH4O15457 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.08■□□□□ 0.32
MSH4O15457 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.08■□□□□ 0.32
MSH4O15457 HLA-V-201ENST00000429037 534 ntBASIC17.08■□□□□ 0.32
MSH4O15457 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.08■□□□□ 0.32
MSH4O15457 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.08■□□□□ 0.32
MSH4O15457 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.08■□□□□ 0.32
MSH4O15457 CSF2RBP1-201ENST00000447905 391 ntBASIC17.08■□□□□ 0.32
MSH4O15457 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
MSH4O15457 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.08■□□□□ 0.32
MSH4O15457 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.08■□□□□ 0.32
MSH4O15457 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.08■□□□□ 0.32
MSH4O15457 AC006453.4-201ENST00000636949 1252 ntBASIC17.08■□□□□ 0.32
MSH4O15457 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
MSH4O15457 TCAF2P1-201ENST00000291129 2421 ntBASIC17.08■□□□□ 0.32
MSH4O15457 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.08■□□□□ 0.32
MSH4O15457 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.08■□□□□ 0.32
MSH4O15457 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
MSH4O15457 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH4O15457 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 CLUHP2-201ENST00000426660 1303 ntBASIC17.07■□□□□ 0.32
MSH4O15457 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH4O15457 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH4O15457 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH4O15457 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 BNIP3P42-201ENST00000454982 569 ntBASIC17.07■□□□□ 0.32
MSH4O15457 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.07■□□□□ 0.32
MSH4O15457 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms