Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC11.57□□□□□ -0.56
COL6A5A8TX70 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
COL6A5A8TX70 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 PTGER4P2-201ENST00000328411 252 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 SLC25A15P1-201ENST00000456738 342 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 PTGER4P3-201ENST00000458150 252 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 SLC25A15P3-201ENST00000505530 290 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC133540.1-201ENST00000620845 1019 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 RNF165-205ENST00000588679 2904 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 WASH3P-207ENST00000560956 1394 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 HNRNPA1P16-201ENST00000575692 955 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 RN7SL121P-201ENST00000584223 273 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC018629.1-201ENST00000623381 1736 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 SOD2-205ENST00000444946 917 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC006986.1-201ENST00000612764 241 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
COL6A5A8TX70 AC005865.2-202ENST00000635814 725 ntBASIC11.56□□□□□ -0.56
COL6A5A8TX70 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC11.55□□□□□ -0.56
COL6A5A8TX70 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
COL6A5A8TX70 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms