Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 CICP24-201ENST00000605464 2705 ntBASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 MIR3197-201ENST00000582241 73 ntBASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 CU634019.7-201ENST00000624153 1185 ntBASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 FP236241.2-201ENST00000624906 1185 ntBASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC4Q9NTJ3 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 LILRP1-201ENST00000444199 1370 ntBASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SMC4Q9NTJ3 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 RNU1-114P-201ENST00000365297 166 ntBASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.6■□□□□ 0.73
SMC4Q9NTJ3 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms