Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 BCYRN1-201ENST00000418539 200 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 RHOQP1-201ENST00000555758 579 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 RASAL2-201ENST00000367649 4378 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AL442647.2-201ENST00000429864 857 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KRT8P37-201ENST00000451609 1420 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TIMM17BP1-201ENST00000545713 516 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SPIB-207ENST00000597855 564 ntTSL 4 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ASPH-205ENST00000445642 3717 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC074338.1-201ENST00000416825 156 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 HLA-A-202ENST00000376806 1854 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AC068587.3-201ENST00000526613 355 ntBASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 APOC4-201ENST00000591600 348 ntTSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 PDIK1L-204ENST00000619836 4252 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms